PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pahal.D01685.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 191aa MW: 20923.7 Da PI: 6.3695 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 25.8 | 1.4e-08 | 9 | 55 | 4 | 50 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 +n+ +r +f kRr +++ A+ LS +a vavi fs+ g+ + ++ Pahal.D01685.1 9 DNEDQRRHSFRKRRPTLFGMAHDLSEEFGAHVAVIAFSPAGEPHAFC 55 78999999*********************************999887 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 0.0015 | 1 | 57 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 1.25E-11 | 4 | 57 | No hit | No description |
PROSITE profile | PS50066 | 12.531 | 4 | 58 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.53E-13 | 4 | 68 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.8E-12 | 10 | 54 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 191 aa Download sequence Send to blast |
MAKELRPFDN EDQRRHSFRK RRPTLFGMAH DLSEEFGAHV AVIAFSPAGE PHAFCAPTAD 60 SVLRTYLPAA DGLLPNPTPH SPFPGSAAGV GAETAGEAAA RVAGMRREVD ETKAMVAEEW 120 ARVAAAREKV RAAQGAAQKQ NWWEVDVEAL GEEELPVFMR ALEMFKAEVQ ERIDAMASAR 180 MSLPREKKRQ * |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025813917.1 | 1e-135 | agamous-like MADS-box protein AGL61 | ||||
TrEMBL | A0A2S3HJ84 | 1e-134 | A0A2S3HJ84_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Da01716.1.p | 1e-111 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7989 | 5 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G24840.1 | 3e-09 | AGAMOUS-like 61 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pahal.D01685.1 |