PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.D01376.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 389aa    MW: 41304.9 Da    PI: 7.7182
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.D01376.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.13.3e-13113162355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     ++h  +Er+RR+++N+ ++ Lr+l+P     + k+ + a+i   +v+YIk+Lq
  Pahal.D01376.1 113 TSHITVERNRRKQMNEHLAVLRSLMPCF---YVKRGDQASIIGGVVDYIKELQ 162
                     789************************9...9********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.234110161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-10113162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.15E-16113184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-13113174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.21E-13113166No hitNo description
SMARTSM003531.6E-11116167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516719.224322388IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MEEALCDQLF SDVDGDLMMH HPSDADDLLG ILEAWEDCVT GGGSTPRGAK VPQATDAAVA  60
TSNPAPASGN VRRLGDREDA TMRAAPKRRR CSPAVSSSDA AATSDDGAAN NNTSHITVER  120
NRRKQMNEHL AVLRSLMPCF YVKRGDQASI IGGVVDYIKE LQQVLQSLEA KKQRKAYTDQ  180
VLSPRPPPAC CSPRPPLSPR PPLPPLKSTP PISPRPSVPI SPRTPPGPGS PYKVRRQPPL  240
PLPLSPPGSA YTSPARTPTR EPSPASSSYL PSLDKIAAEL CAYAAGTNKQ QQRQALLPAA  300
TSGGAVVLLP DVRVEFSGAN LVVKTVSHRE PGQAVKVIAA LEGRSLEILD AKISTVDDTA  360
VNSFTIKIGI ECELSAEELV QEIQQAFS*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0933901e-98FP093390.1 Phyllostachys edulis cDNA clone: bphyem213c13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813040.10.0transcription factor SPEECHLESS-like
TrEMBLA0A2S3HIY90.0A0A2S3HIY9_9POAL; Uncharacterized protein
STRINGPavir.Db01402.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34843577
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53210.11e-35bHLH family protein