PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.D00869.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 343aa    MW: 35456 Da    PI: 9.194
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.D00869.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.75e-09173220455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++iN ++e L+el+P +s    k    a +L + +++++sLq
  Pahal.D00869.1 173 SHSLAERARREKINARMELLKELVPGCS----KVSGTALVLDEIINHVQSLQ 220
                     8*************************94....22445556666666666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.01E-15167238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.00E-9167224No hitNo description
Gene3DG3DSA:4.10.280.101.7E-14169237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.627169219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-6173220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-8175225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MRHASPPPPE LPAAGAEIQA ALIPAASTPS AAGRGGGGGG GGGGSFTALL GLPTSQAMEL  60
LLPRSAAATP PAPAPAPAPA PTFPSDPHLV DRAARLSAFA SPSSPGPTPP PAPPAAAAAN  120
AGKRKADPAD RASKGKAAKK GKTAEEKPAG GDGEDEKPAY VHVRARRGQA TDSHSLAERA  180
RREKINARME LLKELVPGCS KVSGTALVLD EIINHVQSLQ RQVEYLSMRL AAVNPRVDFG  240
GLDSFLTTEC GRIAGLNCKN GIDLEQVTWP EMGVHGARHL MQLQQQFWHG DLAHQHQAVS  300
QWEKRGDGNP PVFSSSSPSL FGYDLTSSGA QQPPASKLKT EL*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0407290.0BT040729.1 Zea mays full-length cDNA clone ZM_BFc0120O20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811441.10.0transcription factor bHLH60-like
SwissprotQ8VZ025e-64BH048_ARATH; Transcription factor bHLH48
TrEMBLA0A2S3HHZ10.0A0A2S3HHZ1_9POAL; Uncharacterized protein
STRINGGRMZM2G378653_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69322735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42300.13e-52bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]