PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.D00863.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 325aa    MW: 34960.4 Da    PI: 10.1129
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.D00863.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_140.94.6e-13145187544
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLee...kvkeLeaeNka 44 
                     k  rr+++NReAAr+sR+RKka+i++Le    + + Le+e+++
  Pahal.D00863.2 145 KTLRRLAQNREAARKSRLRKKAYIQQLESgriRLAHLEQEMQM 187
                     7789***********************9544489999999865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.8E-9140186No hitNo description
SMARTSM003382.2E-4141194IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.577143173IPR004827Basic-leucine zipper domain
PfamPF001701.2E-10145187IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.0E-7146190No hitNo description
PROSITE patternPS000360148163IPR004827Basic-leucine zipper domain
PfamPF141442.2E-25226297IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MAYPSTSGMV QPSSSLHGSI RRDPEGYDMP SDLDQALLLY FDGQQQAKPS IQEQQPQTLN  60
IFPSQPMHFE PSPKGSMASS VAGAQVAGPS KTSPAPPPKA GGGPLGAGKS SKASIKREGS  120
AGGKHGGGAG PSSSDQEGPR TPDPKTLRRL AQNREAARKS RLRKKAYIQQ LESGRIRLAH  180
LEQEMQMART HHQGAALWGT GTLSPDAALF NLEYERWLGD HSKVVAQLRA AAEEHRPDGE  240
LRAYADEAAS HYGALMGLKA RLAAADPLHL LSGLWKGAAE RCFLWIGGFR PSELIKVYSL  300
SRSLSPQPKD QELVSSMPMD RTRR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1121127GGKHGGG
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0550420.0BT055042.1 Zea mays full-length cDNA clone ZM_BFc0123E11 mRNA, complete cds.
GenBankKJ7276040.0KJ727604.1 Zea mays clone pUT5464 bZIP transcription factor (bZIP70) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810392.10.0transcription factor TGAL8-like isoform X2
SwissprotQ69T211e-131TGAL8_ORYSJ; Transcription factor TGAL8
TrEMBLA0A2S3HHY10.0A0A2S3HHY1_9POAL; Uncharacterized protein
STRINGPavir.J05543.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.34e-68bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]