PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.D00720.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family G2-like
Protein Properties Length: 591aa    MW: 64164.9 Da    PI: 9.0396
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.D00720.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like72.75.4e-2368121155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     ++r++W   LH +Fvea++++ G +kA+Pk+ilelm+v+gLt+++v+SH QkY +
  Pahal.D00720.1  68 RQRIKWPGHLHYKFVEAINKI-GMDKAVPKKILELMNVDGLTRDNVASHQQKYHI 121
                     58*******************.*******************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23002.2E-61059No hitNo description
SuperFamilySSF466894.66E-1665125IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-2266125IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-2069120IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 591 aa     Download sequence    Send to blast
CYPRTMRWRL MKGIKHGACD YLVKPAHMEQ VRNIWTHVVK KNRRTTKKNK KDGGCAEEDK  60
DETSTQKRQR IKWPGHLHYK FVEAINKIGM DKAVPKKILE LMNVDGLTRD NVASHQQKYH  120
IYSRKLSEGT LSHSNPFMDD PQALESSQHH AQLVQPSPSS VGASNSSNAR MSYPSTFGMH  180
NLQQDLVQVG NGVNLPKDVL VPVPMPMPVP VPVQDVGRFI YSGRPYANGS SDSLSSSSLC  240
FPSGPSSSSS TNISNGVVFS TTSPFSSRTS GSSSASISND YSPSSTSMRF PSSRSCSFYS  300
SILRGEMLQA NIAIPFDANS FFEEIANGDM PASSGHLPLQ HAELANQPLV HIQPSSAGQF  360
NQVTPSSHLP LHSSELVNQP LIQIQTSSVD LSNYQVDKES HQFSELYNPI NSSRVSVPTR  420
FPDIGHSAGM PISSSHGNHV RINQLSRSVA SFGYVPTFGS QHQNQMSGLL GRTTPTLGFS  480
EQAAHSTLEA LVGPALADLQ IGNSITLTRT PSGGAATGNL PGGGTVDQQA VGDQLNNSNV  540
LSARTSEVQD GVIDDVSHFF ANWVNQVRPL PFLSHLLISK QNLHVKLMKT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-1764127164ARR10-B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14248RRTTKKN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3L6PDP70.0A0A3L6PDP7_PANMI; Uncharacterized protein
STRINGPavir.Db00644.1.p0.0(Panicum virgatum)
STRINGPavir.J35198.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2281434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31920.19e-30response regulator 10