PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.D00652.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 261aa MW: 27544.3 Da PI: 8.6409 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 48.6 | 2e-15 | 25 | 76 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Pahal.D00652.2 25 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 76 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.4E-10 | 25 | 76 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.35E-18 | 25 | 86 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 8.69E-24 | 25 | 86 | No hit | No description |
PROSITE profile | PS51032 | 19.045 | 26 | 84 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-18 | 26 | 85 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-33 | 26 | 90 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.4E-5 | 27 | 38 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.4E-5 | 66 | 86 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MKSMTRQEFI ASLRRKSSGF SRGASIYRGV TRHHQHGRWQ ARIGRVAGNK DLYLGTFSTQ 60 EEAAEAYDIA AIKFRGLNAV TNFDMSRYDV ESILNSDLPV GGGAAGRASK FPLDSLPPAS 120 AAAMITGAAS HAMPPSEKDY WSLLALHYQQ QQQQQFPASA YEAYGSGGVN VDFTMGTSSH 180 SGSNASSGVM WGAATGAMGQ QDSSSSKQGN SGYGSNIPYA AAAMVSGSAG YEGSTGNNGT 240 WVTSNTSTAP QYYNYLFGME * |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT040003 | 0.0 | BT040003.1 Zea mays full-length cDNA clone ZM_BFc0057O19 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025812430.1 | 0.0 | AP2-like ethylene-responsive transcription factor AIL5 | ||||
TrEMBL | A0A2S3HHM7 | 0.0 | A0A2S3HHM7_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Db00529.1.p | 1e-165 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57390.1 | 4e-57 | AINTEGUMENTA-like 5 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.D00652.2 |