PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.D00652.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family AP2
Protein Properties Length: 468aa    MW: 50169.1 Da    PI: 6.0952
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.D00652.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.22.6e-15130189155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Pahal.D00652.1 130 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEEKAARAYDLAALKYWG 189
                     57*******************666664477446*************************98 PP
2AP247.44.7e-15232283155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Pahal.D00652.1 232 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 283
                     57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.5E-12130189IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-17130199IPR016177DNA-binding domain
CDDcd000188.07E-21130199No hitNo description
SMARTSM003804.6E-30131203IPR001471AP2/ERF domain
PROSITE profilePS5103219.23131197IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-16131198IPR001471AP2/ERF domain
PRINTSPR003671.8E-6132143IPR001471AP2/ERF domain
PfamPF008475.8E-10232283IPR001471AP2/ERF domain
CDDcd000183.93E-23232293No hitNo description
SuperFamilySSF541716.21E-18232293IPR016177DNA-binding domain
SMARTSM003801.5E-33233297IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-18233292IPR001471AP2/ERF domain
PROSITE profilePS5103219.045233291IPR001471AP2/ERF domain
PRINTSPR003671.8E-6273293IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MDMDMSSAYP HHWLSFSLSN NYHHGLLEAF SNSSSAPPLG EEGAVEESPK MEDFLGGVGG  60
AGGAPPATTA EDQQLVCGEL GSIAAGFLRQ YDPAPGTVEN PGAVTVAMST DAAESDQARR  120
PVETFGQRTS IYRGVTRHRW TGRYEAHLWD NSCRREGQSR KGRQVYLGGY DKEEKAARAY  180
DLAALKYWGP TTTTNFPVSN YEKELEEMKS MTRQEFIASL RRKSSGFSRG ASIYRGVTRH  240
HQHGRWQARI GRVAGNKDLY LGTFSTQEEA AEAYDIAAIK FRGLNAVTNF DMSRYDVESI  300
LNSDLPVGGG AAGRASKFPL DSLPPASAAA MITGAASHAM PPSEKDYWSL LALHYQQQQQ  360
QQFPASAYEA YGSGGVNVDF TMGTSSHSGS NASSGVMWGA ATGAMGQQDS SSSKQGNSGY  420
GSNIPYAAAA MVSGSAGYEG STGNNGTWVT SNTSTAPQYY NYLFGME*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0400030.0BT040003.1 Zea mays full-length cDNA clone ZM_BFc0057O19 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812430.10.0AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ31e-132AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A2S3HHM70.0A0A2S3HHM7_9POAL; Uncharacterized protein
STRINGPavir.Db00529.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79738151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-126AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]