PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.D00607.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 282aa    MW: 30030.5 Da    PI: 6.0931
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.D00607.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_155.11.6e-17117170356
                     XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 
                     e kr rr+ +NRe+ArrsR+RK+a++ eLe  v++L++eN +L k+l+e +++ 
  Pahal.D00607.1 117 ETKRIRRMVSNRESARRSRRRKQAQLSELESQVEQLKGENATLFKQLSEANQQF 170
                     679*****************************************9888877765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003385.5E-18115179IPR004827Basic-leucine zipper domain
PfamPF001704.4E-15117169IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.679117169IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.29E-12119171No hitNo description
Gene3DG3DSA:1.20.5.1708.6E-14119170No hitNo description
CDDcd147021.86E-6120170No hitNo description
PROSITE patternPS000360122137IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MKKCPSELQL EAFLRESGGG SAAESKSGSG PGEPGGSGVF SPGGVGFGDS NTMDGSSWWF  60
GSIRPVNPPV SQTASISASP RATTSTSHAL ESESDSDSES LYEVEGGSCE RGTKSMETKR  120
IRRMVSNRES ARRSRRRKQA QLSELESQVE QLKGENATLF KQLSEANQQF TTAVTDNRIL  180
KSDVEALRVK VKMAEDMVAR STMSCGLGDL GLAPYLNSRK MCQALNMLTV TGLDLLGSEA  240
FRGPTAARQV QNSPVPSTAS LESLDNRKSS EVTSCAADMW P*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131138RRSRRRKQ
2133138SRRRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). May function as a negative regulator in cold and drought stress responses (PubMed:22189955). {ECO:0000269|PubMed:11133985, ECO:0000269|PubMed:22189955}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by cold stress in roots. {ECO:0000269|PubMed:22189955}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813585.10.0bZIP transcription factor RISBZ5-like
SwissprotQ654B31e-102RSBZ5_ORYSJ; bZIP transcription factor RISBZ5
TrEMBLA0A2S3HHA60.0A0A2S3HHA6_9POAL; Uncharacterized protein
STRINGPavir.Db00496.1.p1e-172(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20953796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.11e-29basic leucine zipper 9
Publications ? help Back to Top
  1. Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F
    A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif.
    J. Biol. Chem., 2001. 276(17): p. 14139-52
    [PMID:11133985]
  2. Liu C,Wu Y,Wang X
    bZIP transcription factor OsbZIP52/RISBZ5: a potential negative regulator of cold and drought stress response in rice.
    Planta, 2012. 235(6): p. 1157-69
    [PMID:22189955]