PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.D00544.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

G2-like

Protein Properties

Length: 246aa MW: 27133.2 Da PI: 8.3336

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.D00544.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	97.5	9.6e-31	18	71	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt+eLH++Fveave LGG+++AtPk+il+lm+vkg++++h+kSHLQ+YR+ Pahal.D00544.1 18 PRMRWTEELHRQFVEAVECLGGQDEATPKRILQLMGVKGVSISHIKSHLQMYRS 71 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.226	14	74	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.9E-29	14	72	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.9E-24	18	71	IPR006447	Myb domain, plants
SuperFamily	SSF46689	1.24E-16	18	72	IPR009057	Homeodomain-like
Pfam	PF00249	6.3E-9	19	70	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MRGFERKGVR QYNRSEVPRM RWTEELHRQF VEAVECLGGQ DEATPKRILQ LMGVKGVSIS 60 HIKSHLQMYR SSSTSSSDHQ SSLQKPTSTS NSKRVFLNRE DHCVYASPDG NTAASDKNIY 120 AALLRGCSHQ SSPYQTPSLQ EVFRSWEQSR GRVPWNSNVL TIEKAAVKPS HTTSSKRPDE 180 KQPGCDLTLS IGLWEDASSD ADGSSTISEE LPAPAAGARR VATVKEEESK PALNLDLTIS 240 SSWLA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-16	19	72	4	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-16	19	72	4	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-16	19	72	3	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-16	19	72	3	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-16	19	72	3	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-16	19	72	3	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-16	19	72	4	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-16	19	72	4	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-16	19	72	4	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-16	19	72	4	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-16	19	72	4	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-16	19	72	4	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU956037	3e-95	EU956037.1 Zea mays clone 1555999 myb-like DNA-binding domain, SHAQKYF class family protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025810426.1	0.0	probable transcription factor KAN3
TrEMBL	A0A2S3HH64	0.0	A0A2S3HH64_9POAL; Uncharacterized protein
STRING	Pavir.Db00422.1.p	1e-154	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5493	37	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02060.1	2e-26	G2-like family protein

Link Out ? help Back to Top
Phytozome	Pahal.D00544.1