PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.D00119.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family DBB
Protein Properties Length: 294aa    MW: 30809.7 Da    PI: 4.8178
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.D00119.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.32.8e-07447542
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                    +C+ ++ +++   C  ++  lC  C +  H+       H+++pl
  Pahal.D00119.1  4 RCDVCGAEPAAVLCCADEAALCSACDTRVHRAnkladkHRRIPL 47
                    8*****************************77999999999886 PP
2zf-B_box24.46.2e-085999337
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                    ++ C+ ++e +   fC +++  lC+dC + +H+       H
  Pahal.D00119.1 59 APLCDVCKERRGLVFCVEDRAILCADCDDPIHSAndltakH 99
                    579*****************************655555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.296147IPR000315B-box-type zinc finger
SMARTSM003361.7E-9147IPR000315B-box-type zinc finger
CDDcd000212.65E-6347No hitNo description
PfamPF006431.9E-6447IPR000315B-box-type zinc finger
SMARTSM003362.8E-1557104IPR000315B-box-type zinc finger
PROSITE profilePS501199.34357104IPR000315B-box-type zinc finger
CDDcd000218.18E-760104No hitNo description
PfamPF006431.3E-560100IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MLVRCDVCGA EPAAVLCCAD EAALCSACDT RVHRANKLAD KHRRIPLIHP SGDDSAAAAP  60
LCDVCKERRG LVFCVEDRAI LCADCDDPIH SANDLTAKHS RFLLVGAKLS AALVDQAPPS  120
PDDCRGSGSD ELHDVAAVCA PQAQGSCTAK SLALDCSNSY GGGGGGSSIS DYLTNICPGW  180
RVDDLLFDDA AFSAASEDRC DEHEQVPSLD ADLFDVIAGR QGKRGALYGG AMGLEKVPAA  240
ASIAVPTAAK QQGRVRERHW SCDSDSDVFA VPEISLQPPA KKARPPAPTF WCF*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0384501e-118BT038450.1 Zea mays full-length cDNA clone ZM_BFb0234M06 mRNA, complete cds.
GenBankEU9680731e-118EU968073.1 Zea mays clone 313792 salt tolerance-like protein mRNA, complete cds.
GenBankHQ8587761e-118HQ858776.1 Zea mays clone UT1762 ORPHAN transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812143.10.0B-box zinc finger protein 20-like
TrEMBLA0A2S3HGD10.0A0A2S3HGD1_9POAL; Uncharacterized protein
STRINGPavir.Db00181.1.p1e-163(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP121002430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75540.13e-41salt tolerance homolog2