PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.C04849.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NAC | ||||||||
Protein Properties | Length: 310aa MW: 35336.3 Da PI: 7.7799 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 154.9 | 3.5e-48 | 29 | 161 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 pG+rFhPtd+elv +yL++kve+k +++ ++ikevdiyk++PwdLp+ + ++++++wyfF+ r +ky+++ r+nr+t sg+Wkatg dk Pahal.C04849.1 29 FPGYRFHPTDQELVGFYLARKVEKKGISI-DIIKEVDIYKHDPWDLPNearhvvQGAGDKEDWYFFCLRGRKYRNSIRPNRVTGSGFWKATGIDK 122 69***************************.99**************9646665433336679********************************* PP NAM 91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +ge glkk+Lv+y+g+a +g+ktdW+mhe+rl Pahal.C04849.1 123 PIHGGaGGECLGLKKSLVYYRGSAGRGTKTDWMMHEFRL 161 ***9868888***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.79E-54 | 28 | 184 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 52.491 | 28 | 184 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.2E-24 | 30 | 161 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 310 aa Download sequence Send to blast |
MEEEKPSERV KEGGGGVEVG TEDDDDLVFP GYRFHPTDQE LVGFYLARKV EKKGISIDII 60 KEVDIYKHDP WDLPNEARHV VQGAGDKEDW YFFCLRGRKY RNSIRPNRVT GSGFWKATGI 120 DKPIHGGAGG ECLGLKKSLV YYRGSAGRGT KTDWMMHEFR LPSSTASAEL QDAEIWTICR 180 IFKRNMSYTY SRRRQQQQKR DHGSKRSHQQ QQQQLQYYYD YRYHHQHGAS MTRSSFDYSS 240 EASEAYPTDH HQPFLLHGFH GASSAKTTAT ASSGLMGAPL LPSMSVWSEL TTFRDSGSTW 300 DELGRIMEI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-47 | 16 | 187 | 1 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-47 | 16 | 187 | 1 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-47 | 16 | 187 | 1 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-47 | 16 | 187 | 1 | 168 | NO APICAL MERISTEM PROTEIN |
4dul_A | 2e-47 | 16 | 187 | 1 | 168 | NAC domain-containing protein 19 |
4dul_B | 2e-47 | 16 | 187 | 1 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025809001.1 | 0.0 | transcription factor JUNGBRUNNEN 1-like | ||||
Swissprot | Q9SK55 | 2e-77 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | A0A2S3HFN1 | 0.0 | A0A2S3HFN1_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ca02638.1.p | 1e-179 | (Panicum virgatum) | ||||
STRING | Pavir.Cb00167.1.p | 1e-179 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1191 | 38 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 2e-77 | NAC domain containing protein 42 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.C04849.1 |