PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C04822.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GATA
Protein Properties Length: 314aa    MW: 35331.1 Da    PI: 8.3609
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C04822.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA36.85.4e-12162192131
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyr 31 
                     CsnC + +Tp WR+gp+g  +LCnaCGl+ +
  Pahal.C04822.1 162 CSNCLSCETPRWRNGPSGIQMLCNACGLRLK 192
                     ****************************987 PP
2GATA57.22.3e-18244278135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++C ++kTp+WR+gp g+ktLCnaCG+++++ +l
  Pahal.C04822.1 244 CTHCMSSKTPQWRSGPLGPKTLCNACGVRFKSGRL 278
                     *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.796156210IPR000679Zinc finger, GATA-type
SMARTSM004011.2E-9156207IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.09E-10159197No hitNo description
Gene3DG3DSA:3.30.50.107.6E-13161195IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.84E-10161192No hitNo description
PfamPF003208.3E-10162192IPR000679Zinc finger, GATA-type
PROSITE patternPS003440162187IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.767238274IPR000679Zinc finger, GATA-type
SMARTSM004015.7E-16238292IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.55E-14240302No hitNo description
Gene3DG3DSA:3.30.50.106.3E-14242276IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.34E-13243300No hitNo description
PfamPF003204.1E-16244278IPR000679Zinc finger, GATA-type
PROSITE patternPS003440244269IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MDVHPANAAA DSLGDLFPHQ AAALESDESN IEWLSGYVED CFSSSTSYTN PAFAISAPTM  60
ANQGAGKPKL PPPSSSNGRR KKRSLASVMG NDDDQQYIIP LYVEPPLLLI DQKHWMAESE  120
LILPKKDKDQ EVCQQQEQEQ EEEKCEKGAL VQFRQERLVK RCSNCLSCET PRWRNGPSGI  180
QMLCNACGLR LKPENRFATI SEENYDQETK KEQDPGKRRD KKKKMIKKTY VSEELSSEKP  240
EKRCTHCMSS KTPQWRSGPL GPKTLCNACG VRFKSGRLLP EYRPANSPTF VSCLHSNSHK  300
KVMQMRQGIA YKE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1216223KRRDKKKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810144.10.0GATA transcription factor 4-like
TrEMBLA0A2S3HFK50.0A0A2S3HFK5_9POAL; GATA transcription factor
TrEMBLA0A2T7EJJ60.0A0A2T7EJJ6_9POAL; GATA transcription factor
STRINGPavir.Cb00086.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59623656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45050.12e-34GATA transcription factor 2