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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Pahal.C04638.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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| Family | bHLH | ||||||||
| Protein Properties | Length: 341aa MW: 35135.6 Da PI: 8.4879 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 50 | 5.4e-16 | 166 | 214 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
+ahn E+rRR++iN+++ +L++l+P + + K + a++L ++++Y+ksLq
Pahal.C04638.1 166 EAHNLTEKRRRHKINERLRTLQQLVPGC----DNKSNQASTLDHTIQYMKSLQ 214
69*************************9....89******************9 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF47459 | 3.93E-19 | 160 | 224 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 3.1E-19 | 161 | 221 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| PROSITE profile | PS50888 | 16.755 | 163 | 213 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd00083 | 1.05E-15 | 166 | 218 | No hit | No description |
| Pfam | PF00010 | 1.2E-13 | 166 | 214 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SMART | SM00353 | 9.5E-15 | 169 | 219 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 341 aa Download sequence Send to blast |
MNCPGHAAVP WWRYPDDAGE AAAAAAAAGG GDTSVDMITD YSTDDLFELV CEQGGGGGAG 60 GAPGLRTMRP AAESYHWSSP PPPEVRFEPP SEGQMAAWLC TIVRGEELAV NDCGGRDDVP 120 AAKGSSDNAS TTTESKGKLP AVTEGMQEMR KPSSAGGSSR RSHHAEAHNL TEKRRRHKIN 180 ERLRTLQQLV PGCDNKSNQA STLDHTIQYM KSLQQHVQAM SIGPARPAAA ATVPVLPSQY 240 AAPGAPPVAV PMMPAASVVL APAPTTMVPF GAMLQMPHHY PAAVPVMMPG SASAVPLYPA 300 AAPPRAAAIA PGGAGGSSAS PRHGSGSRKG KGGRSQRQKH * |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_025806978.1 | 0.0 | putative transcription factor bHLH056 | ||||
| TrEMBL | A0A3L6RBL2 | 0.0 | A0A3L6RBL2_PANMI; Uncharacterized protein | ||||
| STRING | Pavir.Ca02790.1.p | 1e-106 | (Panicum virgatum) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP6283 | 24 | 52 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G28800.1 | 4e-17 | bHLH family protein | ||||
| Link Out ? help Back to Top | |
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| Phytozome | Pahal.C04638.1 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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