PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.C04636.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bHLH

Protein Properties

Length: 330aa MW: 34436.7 Da PI: 7.4403

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.C04636.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	46.5	6.4e-15	160	207	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +ah+ E+rRR++iN+++ +L++l+P + K + a++L ++++Y+ksLq Pahal.C04636.1 160 EAHSLTEKRRRHKINEKLRTLQQLVPGC-----DKSNQASTLDQTIQYMKSLQ 207 58***********************9.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	16.012	157	206	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.06E-14	160	211	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.7E-18	160	214	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.4E-12	160	207	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.49E-17	160	234	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.8E-14	163	212	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MNFPGHASGP PWCYADDAGE AAAAGDATGS FTAMIADYST DDPFYLLWEE QGGGAPGSTT 60 TTTQPPEVWR DPPSEDEMAA WLRAIVKGDE LAFTDGGGRE QAAGGQDVPG TKGSSDASAT 120 DKKEKLPMTE QGTMGAKLEM RKPPAGGGST SRRSHPHHGE AHSLTEKRRR HKINEKLRTL 180 QQLVPGCDKS NQASTLDQTI QYMKSLQQHV QAMSFGPARP PAAVYPVVQP HHAPPGVPPA 240 VDVPMMPAAP VVLAPAPTMV VPFGAMLQLP HYPAAGVPVM MPAAAAAPLY PAARAAAAPE 300 SARSSASHRR GSSSSSSKEK GGGSLRMKH*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025806979.1	7e-93	putative transcription factor bHLH056
TrEMBL	A0A2S3HFI4	0.0	A0A2S3HFI4_9POAL; Uncharacterized protein
STRING	Si024602m	9e-96	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6283	24	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28800.1	1e-19	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pahal.C04636.1