PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.C04635.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 202aa MW: 21936.4 Da PI: 7.1088 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.9 | 2.1e-09 | 172 | 199 | 3 | 30 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 3 rahnerErrRRdriNsafeeLrellPka 30 ++h+ E+rRR +iN++f +L+ l+P + Pahal.C04635.1 172 QTHSRTEKRRRCKINEKFKTLQHLVPGC 199 79************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.14E-8 | 167 | 202 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.35 | 169 | 202 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.0E-9 | 172 | 200 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.04E-6 | 172 | 202 | No hit | No description |
Pfam | PF00010 | 4.5E-7 | 172 | 199 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
METTMNSQDS CPALYYSVNP SEAAGGGAEG ADAFLDKFGD RQSFGDLFDL VLWQGGARGS 60 SMEVQPAAGH LPPPSPAAAV ALPPSDDEMA AWLYPIFRGD HPGVAGHAAA ADDLQAAPNH 120 KREKVDDQQV ADHHMSEDKL PKTEEKCRAQ DSTSFLLRKK ATGGARKSHH AQTHSRTEKR 180 RRCKINEKFK TLQHLVPGCH NK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A3L6RA39 | 1e-109 | A0A3L6RA39_PANMI; Transcription factor PIF1-like | ||||
STRING | Si024311m | 3e-47 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6283 | 24 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28800.1 | 3e-09 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.C04635.1 |