PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C04570.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 495aa    MW: 57101.7 Da    PI: 6.607
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C04570.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM30.11.3e-09128068127
             NAM  68 yatgkrknratksgyWkatgkd.kevlsk..kgel...........vglkktLvfykgrapkgektdWvmheyr 127
                     +++   ++r t+sgyW++   +  ++ sk  +  +            g+++tL fy   +++g+ktdWv+hey+
  Pahal.C04570.1  12 QKKPGSSRRWTHSGYWEENEDEfIAIRSKggG--EsssspssspcyEGVRRTLEFY---EHNGTKTDWVIHEYN 80 
                     4445578899******9775541445554541..256788899999**********...78999*********7 PP
2NAM26.51.8e-0829735473127
             NAM  73 rknratksgyWkatgk.dkevlskkgel.....vglkktLvfykgrapkgektdWvmheyr 127
                       +r+t++g+W++  + dk +  + g+l      gl++tL f+   + +g+ktdW+m ey+
  Pahal.C04570.1 297 SLSRKTHQGRWEEIKShDKLIAIRIGQLpvpqyAGLRRTLEFH---HDDGTKTDWIMLEYH 354
                     34678999****887725555555333355666*********9...78899*********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100513.9791100IPR003441NAC domain
SuperFamilySSF1019411.96E-1013100IPR003441NAC domain
PfamPF023652.3E-61680IPR003441NAC domain
PROSITE profilePS5080812.486187247IPR003656Zinc finger, BED-type
PfamPF028921.3E-5190236IPR003656Zinc finger, BED-type
SMARTSM006141.6E-8191239IPR003656Zinc finger, BED-type
SuperFamilySSF576677.74E-6191237No hitNo description
PROSITE profilePS510059.856240378IPR003441NAC domain
PfamPF023652.2E-7264354IPR003441NAC domain
SuperFamilySSF1019416.41E-11282376IPR003441NAC domain
SMARTSM006141.9E-9438490IPR003656Zinc finger, BED-type
PROSITE profilePS5080810.367438494IPR003656Zinc finger, BED-type
SuperFamilySSF576678.93E-5441490No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MPSPGSIRHA MQKKPGSSRR WTHSGYWEEN EDEFIAIRSK GGGESSSSPS SSPCYEGVRR  60
TLEFYEHNGT KTDWVIHEYN HLTDNMFIQD DMVLRKVFNK KHTDRVRSYL EPLDNIMETY  120
HEALGEHGHD WQGFILDLEP VQDTLATELY SAKRTLFYEV KPSLWGGCQE AEFGCGEFPT  180
ASAAPDGESD DVWQHFTRIN TKDPDVVYAA CYRCDRVLRA HSKNGTSHLR RHLKTHTCTC  240
NNNPSSTTED QEILRELRAN LDLYKQGKME GRVVDSPDLN ASVDPWDLPT PRYFTSSLSR  300
KTHQGRWEEI KSHDKLIAIR IGQLPVPQYA GLRRTLEFHH DDGTKTDWIM LEYHQVDEYN  360
THDLLLEGSM VFRKVIQIFK ELERMWNGDD EEEERYIGER EEEVKACMST LLRDCLLGEV  420
GQSDQSRVGK RKRTGAPEGG SEVWLYFTKI YTMDPDRVYA VCHSCDRGYK GHSKNGTSHL  480
KRHNKTCSSK HRKV*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807169.10.0uncharacterized protein LOC112885747
TrEMBLA0A2T8KLV60.0A0A2T8KLV6_9POAL; Uncharacterized protein
STRINGPavir.J39504.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15166411
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02230.18e-06NAC domain containing protein 4