PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C04569.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 367aa    MW: 41606 Da    PI: 5.7545
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C04569.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM32.52.6e-105016310128
             NAM  10 tdeelvveyLkkkvegkk...leleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk...kg 97 
                     td+e++ ++ +++ e+ k   l    +i++   + +++Pw+L+       ++w+  sk+     +++    +t++gyWk++ ++ + ++    + 
  Pahal.C04569.1  50 TDKEVI-DFVRANYERYKeknLCQPPAIHDDdSLPRLDPWELD-------RSWFINSKKFG---SDE----KTRRGYWKEKDNEFTAIRGdqwR- 128
                     788988.666666555443332222358877358899*****6.......45654443322...222....34569999887766555533440. PP

             NAM  98 el........vglkktLvfykgrapkgektdWvmheyrl 128
                      +        +g k+tL fy    ++++kt+W+m+e+++
  Pahal.C04569.1 129 -QpaqrrpvyIGFKRTLEFYM---NDSTKTEWLMNEFAM 163
                     .1555667779*********4...55568********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100515.72541186IPR003441NAC domain
PfamPF023652.0E-950162IPR003441NAC domain
SuperFamilySSF1019413.53E-1451186IPR003441NAC domain
SMARTSM006143.9E-4280344IPR003656Zinc finger, BED-type
PROSITE profilePS5080810.367280352IPR003656Zinc finger, BED-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MDEVGGGTMF DFSSPGSWVN DLLNDDAAPY SGGGTGGVDS LEAIDLSTAT DKEVIDFVRA  60
NYERYKEKNL CQPPAIHDDD SLPRLDPWEL DRSWFINSKK FGSDEKTRRG YWKEKDNEFT  120
AIRGDQWRQP AQRRPVYIGF KRTLEFYMND STKTEWLMNE FAMIHQSDDG QFFLKEEVVI  180
SEVFKKDKDA NLRPPMHPQN CPREMANENC PREMANKNCP REMANENGEQ GDREDEPNRD  240
DNTASPGDRP PRHGAARSNL QAPTGKRMRP DDDPSGSIRV SESEVWQQLT RVYVEVPKEA  300
GSSRRKDSKK LVYAVCDHCD RVFRASSKNG TSSLRRHAEG CQCRHSSQAR ARDIVLQPGP  360
SGGYAR*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806969.10.0uncharacterized protein LOC112885598
TrEMBLA0A2T7EIF90.0A0A2T7EIF9_9POAL; Uncharacterized protein
STRINGPavir.Cb00455.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2264124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12977.13e-08NAC family protein