PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pahal.C04539.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 260aa MW: 26793.9 Da PI: 7.1921 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.9 | 0.0015 | 173 | 192 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C+ Cgk F++ L H Pahal.C04539.1 173 HECNVCGKAFPTGQALGGHK 192 78*********988886665 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.17E-9 | 102 | 125 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 8.8E-5 | 102 | 127 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.08 | 103 | 125 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 3.7E-12 | 103 | 127 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.427 | 103 | 130 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 105 | 125 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.17E-9 | 168 | 195 | No hit | No description |
Pfam | PF13912 | 2.6E-13 | 172 | 197 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.063 | 173 | 195 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.388 | 173 | 195 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 7.9E-5 | 173 | 195 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 175 | 195 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006979 | Biological Process | response to oxidative stress | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009644 | Biological Process | response to high light intensity | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010117 | Biological Process | photoprotection | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0015979 | Biological Process | photosynthesis | ||||
GO:0035264 | Biological Process | multicellular organism growth | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 260 aa Download sequence Send to blast |
MAVEAVLDAA ATPSPEVVFA AAAAPATSSG GDEEEVEGQE AKAVTDQQQR AEGWAKRKRS 60 RRRREQLPRE PTEEEYLALC LVMLARGRRD VAAPAPPHQQ EPHACSVCGK AFASYQALGG 120 HKASHRTKPP APVATASTAA GAEQQQQQHA APAPSSSPAG SAGEGGKPAA AAHECNVCGK 180 AFPTGQALGG HKRCHYDGTI GSAAAPARSS RVTSSTAVGG FDLNLPALPD VPERCGAVPE 240 EEEVLSPLAF KKPRFMIPA* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Potential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00162 | DAP | Transfer from AT1G27730 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU955742 | 3e-52 | EU955742.1 Zea mays clone 1544525 zinc-finger protein 1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025808181.1 | 0.0 | zinc finger protein 1-like | ||||
Swissprot | Q42430 | 1e-42 | ZFP1_WHEAT; Zinc finger protein 1 | ||||
TrEMBL | A0A2S3HEY6 | 0.0 | A0A2S3HEY6_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J06981.1.p | 1e-105 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1022 | 36 | 113 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G27730.1 | 5e-30 | salt tolerance zinc finger |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pahal.C04539.1 |