PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C04526.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 303aa    MW: 32903.4 Da    PI: 4.8075
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C04526.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.48.3e-112302701055
                     HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  Pahal.C04526.1 230 RKRRERINERLKILQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 270
                     9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.799220269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-14220286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-12225281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-11226275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.13E-12229274No hitNo description
PfamPF000103.8E-8230270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0048766Biological Processroot hair initiation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MEAGGLITEV GWTEFDFLSH GEESEVMAQL LGAFPSHGEE GHHELPWSDQ ASNAYSDNIG  60
SSLAVPPAFE GYCLSDSNEA LRISSCIADD DLSSVQEYGA AEFVNMFSNH SPNFYGNGGR  120
SCEDVDGPSM SMLNSVSATN KRKHLAGELD GQTRGRKCAR RGETKRTKRA KQSGDEDPSM  180
AIASGSPTSC CTSDSDSNAS LESADADARP KGKARAGRGA TTEPQSIYAR KRRERINERL  240
KILQNLVPNG TKVDISTMLE EAVHYVKFLQ LQIRLLSSDD MWMYAPIAYN GMNIGIDLNM  300
DR*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6616595e-48AY661659.1 Sorghum bicolor clone BAC 75D9, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806266.10.0transcription factor bHLH139-like isoform X1
RefseqXP_025806267.10.0transcription factor bHLH139-like isoform X1
TrEMBLA0A2S3HF400.0A0A2S3HF40_9POAL; Uncharacterized protein
STRINGPavir.Cb00430.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43103270
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.14e-51bHLH family protein