PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.C04521.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Dof

Protein Properties

Length: 240aa MW: 24310 Da PI: 9.7134

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.C04521.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	111.3	4.5e-35	31	85	6	60
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 +cprC s++tkfCyynny+++qPr+fC+aCrryWt GG+lrnvPvGg++rk+ + Pahal.C04521.1 31 ERCPRCASRDTKFCYYNNYNTAQPRHFCRACRRYWTLGGSLRNVPVGGSARKRPR 85 68*************************************************9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50884	27.587	31	85	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.5E-30	31	83	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	5.0E-20	32	78	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	33	69	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MEAPLHRSPA PLPPPPDALL LRQPAAAAGR ERCPRCASRD TKFCYYNNYN TAQPRHFCRA 60 CRRYWTLGGS LRNVPVGGSA RKRPRPARPT RAIAAAVAAA TTTAPAPSGP FAAASHVAAA 120 SAPALQGGGL LGSLPLLALG AAPLLEGRLG SDDLGLGQPA LLAAGAGDLA QLAFGAGPLP 180 WPVATTILEG ERAEAAWKSC GAFPLPPAAA LWQELVAAAP PAEAGGLPLH HGGSPHLLL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	81	85	KRPRP

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY661659	8e-71	AY661659.1 Sorghum bicolor clone BAC 75D9, complete sequence.
GenBank	HQ540084	8e-71	HQ540084.1 Sorghum bicolor clone SbDof1 Dof-type zinc finger protein gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025805366.1	1e-163	dof zinc finger protein MNB1A-like
TrEMBL	A0A2S3HEZ3	1e-161	A0A2S3HEZ3_9POAL; Uncharacterized protein
STRING	GRMZM2G131897_P01	1e-60	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	3e-23	DOF zinc finger protein 1

Link Out ? help Back to Top
Phytozome	Pahal.C04521.1