PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C04513.4
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 354aa    MW: 40830.5 Da    PI: 8.6051
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C04513.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.31.6e-19391161598
                     -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3  15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      +++p kf+++++g+ ++   l l+ +sg++W v +  +k++++ +lt+GWk+Fvka++Lke+D ++F+  g+s+f   +++f+
  Pahal.C04513.4  39 GISIPAKFVKNFNGQITK--GLDLKVPSGETWHVCV--DKRDDELLLTSGWKDFVKAHELKENDLLIFTCRGNSSF--EISIFE 116
                     389******999888555..5***************..*******************************9998999..777776 PP
2B341.81.9e-13248344399
                     EE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..E CS
              B3   3 kvltpsdvlks.grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.sefelv 93 
                      vl +s+  ++ + l++p +fa++h ++  ++ +++l   ++  +W+v++ y+ + ++   l     +Fv+ n+L+egD +vF+l++  ++ +++
  Pahal.C04513.4 248 AVLQKSHCQRRsNFLIVPSRFAADHLQE--RTEEIILCRpSRKDKWSVRYYYKTYTRGfQSL--PFFKFVHGNKLREGDACVFELMKGaKRVTMR 338
                     5666666665547789********9433..33467776626669******886666663444..4999****************99877****** PP

                     EEEE-S CS
              B3  94 vkvfrk 99 
                     v+v+rk
  Pahal.C04513.4 339 VHVIRK 344
                     ***997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.92E-2321120IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.74725118IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.6E-2227120IPR015300DNA-binding pseudobarrel domain
CDDcd100176.83E-2027115No hitNo description
SMARTSM010191.1E-1328118IPR003340B3 DNA binding domain
PfamPF023621.2E-1638117IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.1E-19238344IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-17239343IPR015300DNA-binding pseudobarrel domain
CDDcd100173.69E-14244343No hitNo description
PfamPF023627.4E-12246344IPR003340B3 DNA binding domain
SMARTSM010192.2E-10246345IPR003340B3 DNA binding domain
PROSITE profilePS5086310.461247345IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MVEKGCESCR EWREHYYREH MDVTKIRFFK FMTGDFVRGI SIPAKFVKNF NGQITKGLDL  60
KVPSGETWHV CVDKRDDELL LTSGWKDFVK AHELKENDLL IFTCRGNSSF EISIFEASSC  120
EKLSSLFANR IGPNLHKHLN DTAGQHAEPY TLTDSEEASM APQLVGSTHM ASTSKKYNCK  180
TKPRKEPQSL NSSSYHVKHE GIEEEESDDM YADSKFYYSR MANQFTVEEK ENILSLASIQ  240
PENPAFVAVL QKSHCQRRSN FLIVPSRFAA DHLQERTEEI ILCRPSRKDK WSVRYYYKTY  300
TRGFQSLPFF KFVHGNKLRE GDACVFELMK GAKRVTMRVH VIRKVGDRFV LVG*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808343.10.0B3 domain-containing protein Os12g0592300-like
SwissprotQ2QMT21e-138Y1223_ORYSJ; B3 domain-containing protein Os12g0592300
TrEMBLA0A2S3HF200.0A0A2S3HF20_9POAL; Uncharacterized protein
STRINGSi024966m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.18e-25B3 family protein