PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.C04503.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

C2H2

Protein Properties

Length: 307aa MW: 34840 Da PI: 8.0457

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.C04503.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.6	0.00042	110	132	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ C+++++++ +L H + H Pahal.C04503.1 110 SCSVCSRVYPTSRLLSIHVSEaH 132 6*****************99877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	7.7	82	107	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	84	107	IPR007087	Zinc finger, C2H2
SMART	SM00355	5.4	109	132	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	111	132	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.33	147	172	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	149	172	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MQQRPEDAME EVEAEAEAAP KAAAGPELGF WLAARRRLAP DDPFFAAGDL ERELLAKHVA 60 LDLSEDDRNQ LEKMEVASTC TLFCPIAGCG VHLDCLEDFE DHYVTRHTAS CSVCSRVYPT 120 SRLLSIHVSE AHDSYFQAKV ARGFPMYECL VEGCGVKLKS YKSRQQHLID KHQFPKSFEF 180 FKKARPSQRQ RQKSHRRQTA HKGEETRDNS MDVDGKGTRQ TNWRYRPKQH DHKESIENDR 240 QHKEAKENEM EVEQKIDGLT SAVSKLSTAD STPANVTFGH RRSRGLTFVP RSIRQNKKAA 300 SQPEAK*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025826617.1	0.0	zinc finger protein 511
TrEMBL	A0A2S3IE81	0.0	A0A2S3IE81_9POAL; Uncharacterized protein
STRING	Si026682m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10911	26	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14140.1	6e-95	zinc ion binding;nucleic acid binding;zinc ion binding

Link Out ? help Back to Top
Phytozome	Pahal.C04503.1