PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.C04264.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

GeBP

Protein Properties

Length: 373aa MW: 40162 Da PI: 6.1913

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.C04264.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	111.6	5e-35	83	182	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifels 92 lfqrlw+eeDeiv+L+G+ +f+a +g+ +++ d+d fye +++++++++sksqlveK+rrLK+K++++v++ ++sg +sf+++h+q ife++ Pahal.C04264.1 83 LFQRLWTEEDEIVILRGFAEFTAARGTafASHQyDTDPFYEDMRRRLQLDFSKSQLVEKLRRLKRKYRNCVSRlRESGATFSFRSPHEQAIFEIA 177 79**********************99877778***********************************8999************** PP DUF573 93 kkiWg 97 + iW+ Pahal.C04264.1 178 RNIWR 182 **8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	4.3E-31	84	181	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
MHPTGDDPSA AAGISFPDVD GGGGGGGDSE DADFAGGHLL DPTDPSLPNP TTSSATGLPH 60 AVPTGGSGGG PVTSGNGGER RPLFQRLWTE EDEIVILRGF AEFTAARGTA FASHQYDTDP 120 FYEDMRRRLQ LDFSKSQLVE KLRRLKRKYR NCVSRLRESG ATFSFRSPHE QAIFEIARNI 180 WRPTNKHGRD PSADSDDEDA AANTSPNGEV KSPSSGRQRR RRRATDFAAA AGTAPATSMV 240 QPSQPVQLSV SVPVKMEDSL PALPQNPMPV TVTMDGSEPL RLPVMSPQSG VSDAEKSCLT 300 PLLKEMIHAV INVGTNPCGA KLPEPPLGLP MEGEKWRKQR ILELEVYLKR IELLQDQAKA 360 TLEELKSSTR GT*

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

MHPTGDDPSA AAGISFPDVD GGGGGGGDSE DADFAGGHLL DPTDPSLPNP TTSSATGLPH  60
AVPTGGSGGG PVTSGNGGER RPLFQRLWTE EDEIVILRGF AEFTAARGTA FASHQYDTDP  120
FYEDMRRRLQ LDFSKSQLVE KLRRLKRKYR NCVSRLRESG ATFSFRSPHE QAIFEIARNI  180
WRPTNKHGRD PSADSDDEDA AANTSPNGEV KSPSSGRQRR RRRATDFAAA AGTAPATSMV  240
QPSQPVQLSV SVPVKMEDSL PALPQNPMPV TVTMDGSEPL RLPVMSPQSG VSDAEKSCLT  300
PLLKEMIHAV INVGTNPCGA KLPEPPLGLP MEGEKWRKQR ILELEVYLKR IELLQDQAKA  360
TLEELKSSTR GT*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT041652	0.0	BT041652.1 Zea mays full-length cDNA clone ZM_BFb0025B02 mRNA, complete cds.
GenBank	EU969972	0.0	EU969972.1 Zea mays clone 337956 hypothetical protein mRNA, complete cds.
GenBank	JX428455	0.0	JX428455.1 Zea mays subsp. mays clone pUT3049 GBP12 GeBP type transcription factor mRNA, partial cds.
GenBank	KJ726797	0.0	KJ726797.1 Zea mays clone pUT2289 GeBP transcription factor (GBP12) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025799483.1	0.0	probable transcription factor At3g04930
TrEMBL	A0A2S3H4E0	0.0	A0A2S3H4E0_9POAL; Uncharacterized protein
STRING	Pavir.Bb03462.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP974	37	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04930.2	3e-35	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Phytozome	Pahal.C04264.1