PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C04225.3
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 1137aa    MW: 127639 Da    PI: 7.7748
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C04225.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.0001910171040122
                      EEET..TTTEEESSHHHHHHHHHH CS
         zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt 22  
                      ++C    C++sFs++ +L  H r 
  Pahal.C04225.3 1017 FSCDieGCDMSFSTQQDLALHKRD 1040
                      899999***************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003559.710171039IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.88710401069IPR007087Zinc finger, C2H2
SMARTSM003551510401064IPR015880Zinc finger, C2H2-like
SuperFamilySSF576679.92E-510411073No hitNo description
PROSITE patternPS00028010421064IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.7E-910671094IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.34410701099IPR007087Zinc finger, C2H2
SMARTSM003550.00210701094IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028010721094IPR007087Zinc finger, C2H2
SuperFamilySSF576673.08E-910801123No hitNo description
Gene3DG3DSA:3.30.160.603.2E-910951123IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.84511001131IPR007087Zinc finger, C2H2
SMARTSM003551.111001126IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028011021126IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0035067Biological Processnegative regulation of histone acetylation
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1137 aa     Download sequence    Send to blast
MRRQLSCLLK CFFLLEFLAA DWYKTLVNLL SRSLELIIPV LAMVAKEAAV RRASTNCGPL  60
VSHYQLLYEL ALSLRPRELK NSHDVPRSSR LRDKKKNESE IMIKETFVGS VIENNSFLSI  120
LLDKSSCVII PEIEFPLPSF PTMMVPEVTV KQALIAGPCS IRQKKAEDML ASATTSFAFN  180
GRKLYETKFG TVNSSAFLLN PEIQSGVIEK GRSHQGGGLL DQGRLPCVQC GILSYACVAI  240
IQPKEAAVQY VISQECMSSS AKHGEIMKSD DTPNWISIVP PQGHSSETDD NTIHNVNSAH  300
VSDRCRQLYT SSTHGCTSAL GLLASAYDSS DSDEEAEMPN EIANISANND AENGVTNIQS  360
SGRSIQHQNT NLHLSEEECD PRATPSPMKP VDDRSIAMTQ ASIGTDMTRL AELGESLTAY  420
EQWSPYVDLD DDPTASGAKT SLNTSFSRAK GAMEPDALTL LKYSKDSCRM HVFCLEHALE  480
TWTQLQQIGG ANIMLLCHPE YPAAELAAKV IAEELGMKHA WKDITFKQAT DEDIGRIRLA  540
LQDEDAEPTS SDWAVKMGIN IYYSAKQSKS PLYSKQVPYN SIIYKAFAQE NPDRDEERQR  600
SRTTKKKVAG SWCGKVWMSN QVHPLLACER EEEDLDMVCS KAMVPVSSYD RIQEEPSTRS  660
TSLISRSLSK RISRRKEVDS VEKSRAKKKR YTTSDLATFD QPRNCDDHDK HEDGGESESE  720
DAQNTQQHQQ YESQKMNKKS SSKRRKDDKR KNYFYERRNY NDDIDYKLSI DWDNTPPQGL  780
DVVEVKSGAQ LQGSKKKSSK CKANDDLSNV EKKLQKMGKK VSTKKHKNDK TNQQFQGNHN  840
EDNVDLLPED NGDEASQESW DEVPTQKTDD VKVKSRGKMH SGKKKASKCQ TSDGLDNVDL  900
LHEDNGYEAT QESWDEVPKQ KTDDVRVNSR GKTHIGKKKA SKCQISDGLD NGDNEAKFSC  960
DTAVCNRDKA TIDDWEEIPK EKADDVKVKS NMQSGKKKAS KRPASDGLRN GDKGAKFSCD  1020
IEGCDMSFST QQDLALHKRD ICPVKGCKKK FFCHKYLLQH RKVHLDERPL MCSFTGCKKT  1080
FKWPWARTEH MRVHTGVRPY ACTEPGCTQT FRFVSDFSRH KRKTGHSSDK KKKNST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A3e-541015113321139Lysine-specific demethylase REF6
6a58_A3e-541015113321139Lysine-specific demethylase REF6
6a59_A3e-541015113321139Lysine-specific demethylase REF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1673689RRKEVDSVEKSRAKKKR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00608ChIP-seqTransfer from AT3G48430Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807104.10.0lysine-specific demethylase JMJ705-like
TrEMBLA0A2S3HD450.0A0A2S3HD45_9POAL; Uncharacterized protein
STRINGPavir.Cb01041.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.14e-53relative of early flowering 6