PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C04225.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 1443aa    MW: 160828 Da    PI: 7.3745
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C04225.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.0002413231346122
                      EEET..TTTEEESSHHHHHHHHHH CS
         zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt 22  
                      ++C    C++sFs++ +L  H r 
  Pahal.C04225.2 1323 FSCDieGCDMSFSTQQDLALHKRD 1346
                      899999***************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005451.7E-161758IPR003349JmjN domain
PROSITE profilePS5118314.4511859IPR003349JmjN domain
PfamPF023758.3E-141952IPR003349JmjN domain
PROSITE profilePS5118435.512196365IPR003347JmjC domain
SMARTSM005583.2E-46196365IPR003347JmjC domain
SuperFamilySSF511972.75E-24210361No hitNo description
PfamPF023734.0E-36229348IPR003347JmjC domain
SMARTSM003559.713231345IPR015880Zinc finger, C2H2-like
SMARTSM003551513461370IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.88713461375IPR007087Zinc finger, C2H2
PROSITE patternPS00028013481370IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.2E-913731400IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00213761400IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.34413761405IPR007087Zinc finger, C2H2
PROSITE patternPS00028013781400IPR007087Zinc finger, C2H2
SuperFamilySSF576674.07E-913861429No hitNo description
Gene3DG3DSA:3.30.160.604.2E-914011429IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003551.114061432IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.84514061437IPR007087Zinc finger, C2H2
PROSITE patternPS00028014081432IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0035067Biological Processnegative regulation of histone acetylation
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1443 aa     Download sequence    Send to blast
MSPPAVETPE WLRNLPVAPE YRPTAAEFAD PIAYILKIEA EASRYGICKV VPPLAAPPRE  60
ATVERLRASF AANAAAGSGI DGATPAPTFP TRLQQVGFST KNRRPASRRV WESGERYTLE  120
AFRAKARDIE LPRHAVPPKH ATQLQLEALF WGACAARPFN VEYGNDMPGS GFAAPEELDL  180
DLEGGGGGNA ALAARDVGET EWNMRLAPRA RGSLLRAMGR DVAGVTTPML YVAMLYSWFA  240
WHVEDHELHS LNYLHFGKPK TWYGVPRDAM LAFEDAVRVH GYADDLNAIM AFQTLNEKTT  300
VLSPEVLLSA GVPCCRLVQN PGEFIITFPG AYHSGFSHGF NCGEATNIAT PRWLQVAKEA  360
AVRRASTNCG PLVSHYQLLY ELALSLRPRE LKNSHDVPRS SRLRDKKKNE SEIMIKETFV  420
GSVIENNSFL SILLDKSSCV IIPEIEFPLP SFPTMMVPEV TVKQALIAGP CSIRQKKAED  480
MLASATTSFA FNGRKLYETK FGTVNSSAFL LNPEIQSGVI EKGRSHQGGG LLDQGRLPCV  540
QCGILSYACV AIIQPKEAAV QYVISQECMS SSAKHGEIMK SDDTPNWISI VPPQDDNTIH  600
NVNSAHVSDR CRQLYTSSTH GCTSALGLLA SAYDSSDSDE EAEMPNEIAN ISANNDAENG  660
VTNIQSSGRS IQHQNTNLHL SEEECDPRAT PSPMKPVDDR SIAMTQASIG TDMTRLAELG  720
ESLTAYEQWS PYVDLDDDPT ASGAKTSLNT SFSRAKGAME PDALTLLKYS KDSCRMHVFC  780
LEHALETWTQ LQQIGGANIM LLCHPEYPAA ELAAKVIAEE LGMKHAWKDI TFKQATDEDI  840
GRIRLALQDE DAEPTSSDWA VKMGINIYYS AKQSKSPLYS KQVPYNSIIY KAFAQENPDR  900
DEERQRSRTT KKKVAGSWCG KVWMSNQVHP LLACEREEED LDMVCSKAMV PVSSYDRIQE  960
EPSTRSTSLI SRSLSKRISR RKEVDSVEKS RAKKKRYTTS DLATFDQPRN CDDHDKHEDG  1020
GESESEDAQN TQQHQQYESQ KMNKKSSSKR RKDDKRKNYF YERRNYNDDI DYKLSIDWDN  1080
TPPQGLDVVE VKSGAQLQGS KKKSSKCKAN DDLSNVEKKL QKMGKKVSTK KHKNDKTNQQ  1140
FQGNHNEDNV DLLPEDNGDE ASQESWDEVP TQKTDDVKVK SRGKMHSGKK KASKCQTSDG  1200
LDNVDLLHED NGYEATQESW DEVPKQKTDD VRVNSRGKTH IGKKKASKCQ ISDGLDNGDN  1260
EAKFSCDTAV CNRDKATIDD WEEIPKEKAD DVKVKSNMQS GKKKASKRPA SDGLRNGDKG  1320
AKFSCDIEGC DMSFSTQQDL ALHKRDICPV KGCKKKFFCH KYLLQHRKVH LDERPLMCSF  1380
TGCKKTFKWP WARTEHMRVH TGVRPYACTE PGCTQTFRFV SDFSRHKRKT GHSSDKKKKN  1440
ST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A3e-68103867353Transcription factor jumonji (Jmj) family protein
6ip4_A3e-68103867353Arabidopsis JMJ13
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1979995RRKEVDSVEKSRAKKKR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00608ChIP-seqTransfer from AT3G48430Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807104.10.0lysine-specific demethylase JMJ705-like
TrEMBLA0A2S3HD450.0A0A2S3HD45_9POAL; Uncharacterized protein
STRINGPavir.Cb01041.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.11e-158relative of early flowering 6