PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C04225.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 1449aa    MW: 161426 Da    PI: 7.3184
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C04225.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.0002513291352122
                      EEET..TTTEEESSHHHHHHHHHH CS
         zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt 22  
                      ++C    C++sFs++ +L  H r 
  Pahal.C04225.1 1329 FSCDieGCDMSFSTQQDLALHKRD 1352
                      899999***************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005451.7E-161758IPR003349JmjN domain
PROSITE profilePS5118314.4511859IPR003349JmjN domain
PfamPF023758.3E-141952IPR003349JmjN domain
PROSITE profilePS5118435.512196365IPR003347JmjC domain
SMARTSM005583.2E-46196365IPR003347JmjC domain
SuperFamilySSF511972.75E-24210361No hitNo description
PfamPF023734.0E-36229348IPR003347JmjC domain
SMARTSM003559.713291351IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.88713521381IPR007087Zinc finger, C2H2
SMARTSM003551513521376IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028013541376IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.3E-913791406IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.34413821411IPR007087Zinc finger, C2H2
SMARTSM003550.00213821406IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028013841406IPR007087Zinc finger, C2H2
SuperFamilySSF576674.07E-913921435No hitNo description
Gene3DG3DSA:3.30.160.604.2E-914071435IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003551.114121438IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.84514121443IPR007087Zinc finger, C2H2
PROSITE patternPS00028014141438IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0035067Biological Processnegative regulation of histone acetylation
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1449 aa     Download sequence    Send to blast
MSPPAVETPE WLRNLPVAPE YRPTAAEFAD PIAYILKIEA EASRYGICKV VPPLAAPPRE  60
ATVERLRASF AANAAAGSGI DGATPAPTFP TRLQQVGFST KNRRPASRRV WESGERYTLE  120
AFRAKARDIE LPRHAVPPKH ATQLQLEALF WGACAARPFN VEYGNDMPGS GFAAPEELDL  180
DLEGGGGGNA ALAARDVGET EWNMRLAPRA RGSLLRAMGR DVAGVTTPML YVAMLYSWFA  240
WHVEDHELHS LNYLHFGKPK TWYGVPRDAM LAFEDAVRVH GYADDLNAIM AFQTLNEKTT  300
VLSPEVLLSA GVPCCRLVQN PGEFIITFPG AYHSGFSHGF NCGEATNIAT PRWLQVAKEA  360
AVRRASTNCG PLVSHYQLLY ELALSLRPRE LKNSHDVPRS SRLRDKKKNE SEIMIKETFV  420
GSVIENNSFL SILLDKSSCV IIPEIEFPLP SFPTMMVPEV TVKQALIAGP CSIRQKKAED  480
MLASATTSFA FNGRKLYETK FGTVNSSAFL LNPEIQSGVI EKGRSHQGGG LLDQGRLPCV  540
QCGILSYACV AIIQPKEAAV QYVISQECMS SSAKHGEIMK SDDTPNWISI VPPQGHSSET  600
DDNTIHNVNS AHVSDRCRQL YTSSTHGCTS ALGLLASAYD SSDSDEEAEM PNEIANISAN  660
NDAENGVTNI QSSGRSIQHQ NTNLHLSEEE CDPRATPSPM KPVDDRSIAM TQASIGTDMT  720
RLAELGESLT AYEQWSPYVD LDDDPTASGA KTSLNTSFSR AKGAMEPDAL TLLKYSKDSC  780
RMHVFCLEHA LETWTQLQQI GGANIMLLCH PEYPAAELAA KVIAEELGMK HAWKDITFKQ  840
ATDEDIGRIR LALQDEDAEP TSSDWAVKMG INIYYSAKQS KSPLYSKQVP YNSIIYKAFA  900
QENPDRDEER QRSRTTKKKV AGSWCGKVWM SNQVHPLLAC EREEEDLDMV CSKAMVPVSS  960
YDRIQEEPST RSTSLISRSL SKRISRRKEV DSVEKSRAKK KRYTTSDLAT FDQPRNCDDH  1020
DKHEDGGESE SEDAQNTQQH QQYESQKMNK KSSSKRRKDD KRKNYFYERR NYNDDIDYKL  1080
SIDWDNTPPQ GLDVVEVKSG AQLQGSKKKS SKCKANDDLS NVEKKLQKMG KKVSTKKHKN  1140
DKTNQQFQGN HNEDNVDLLP EDNGDEASQE SWDEVPTQKT DDVKVKSRGK MHSGKKKASK  1200
CQTSDGLDNV DLLHEDNGYE ATQESWDEVP KQKTDDVRVN SRGKTHIGKK KASKCQISDG  1260
LDNGDNEAKF SCDTAVCNRD KATIDDWEEI PKEKADDVKV KSNMQSGKKK ASKRPASDGL  1320
RNGDKGAKFS CDIEGCDMSF STQQDLALHK RDICPVKGCK KKFFCHKYLL QHRKVHLDER  1380
PLMCSFTGCK KTFKWPWART EHMRVHTGVR PYACTEPGCT QTFRFVSDFS RHKRKTGHSS  1440
DKKKKNST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A3e-68103867353Transcription factor jumonji (Jmj) family protein
6ip4_A3e-68103867353Arabidopsis JMJ13
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19851001RRKEVDSVEKSRAKKKR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00608ChIP-seqTransfer from AT3G48430Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807104.10.0lysine-specific demethylase JMJ705-like
TrEMBLA0A2S3HD450.0A0A2S3HD45_9POAL; Uncharacterized protein
STRINGPavir.Cb01041.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67183035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.11e-158relative of early flowering 6