PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.C04144.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 250aa MW: 27842.5 Da PI: 8.4935 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 75.8 | 3.2e-24 | 16 | 64 | 2 | 50 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 rien+ rqvtfskRr g+ KKA EL vLCda+va+++fs +g+l++++ Pahal.C04144.1 16 RIENSVSRQVTFSKRRRGLAKKARELAVLCDADVALLVFSDKGRLHDFA 64 8**********************************************97 PP | |||||||
2 | K-box | 85 | 1.5e-28 | 93 | 180 | 10 | 97 |
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 e+++ +++ ++ kL+++ie Lq++qR+l+Ge+LesL+++e qqLe+q++++l++iRs+K+++ll++ieel+kke+ l e+n+ L+k+ Pahal.C04144.1 93 PEETQGNMSYDHIKLRSKIEALQKSQRNLMGEQLESLTFREVQQLEHQIDSALRSIRSRKDHVLLNSIEELRKKERFLMEQNTLLEKE 180 5777899****************************************************************************99886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.1E-29 | 7 | 66 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 29.184 | 7 | 67 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.28E-28 | 8 | 89 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-25 | 9 | 29 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 9 | 63 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.84E-32 | 11 | 80 | No hit | No description |
Pfam | PF00319 | 8.7E-24 | 16 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-25 | 29 | 44 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-25 | 44 | 65 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 6.7E-25 | 95 | 180 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.558 | 97 | 188 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MGRGRGRGRG KVEVWRIENS VSRQVTFSKR RRGLAKKARE LAVLCDADVA LLVFSDKGRL 60 HDFAAHDGSM ERILDRYERY LLCEGGDVME DRPEETQGNM SYDHIKLRSK IEALQKSQRN 120 LMGEQLESLT FREVQQLEHQ IDSALRSIRS RKDHVLLNSI EELRKKERFL MEQNTLLEKE 180 KAALLDPSLH AKNSPASSTS AEGAAVPNLN ICAADSDDEP APPPAAPHGA ATGLPWWLLR 240 PPASGQRGG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 3e-17 | 8 | 80 | 2 | 72 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 3e-17 | 8 | 80 | 2 | 72 | Myocyte-specific enhancer factor 2B |
1tqe_R | 3e-17 | 8 | 80 | 2 | 72 | Myocyte-specific enhancer factor 2B |
1tqe_S | 3e-17 | 8 | 80 | 2 | 72 | Myocyte-specific enhancer factor 2B |
6c9l_A | 3e-17 | 8 | 80 | 2 | 72 | Myocyte-specific enhancer factor 2B |
6c9l_B | 3e-17 | 8 | 80 | 2 | 72 | Myocyte-specific enhancer factor 2B |
6c9l_C | 3e-17 | 8 | 80 | 2 | 72 | Myocyte-specific enhancer factor 2B |
6c9l_D | 3e-17 | 8 | 80 | 2 | 72 | Myocyte-specific enhancer factor 2B |
6c9l_E | 3e-17 | 8 | 80 | 2 | 72 | Myocyte-specific enhancer factor 2B |
6c9l_F | 3e-17 | 8 | 80 | 2 | 72 | Myocyte-specific enhancer factor 2B |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU975067 | 1e-180 | EU975067.1 Zea mays clone 466497 MADS-box transcription factor 14 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025806918.1 | 1e-180 | MADS-box transcription factor 20-like | ||||
Swissprot | Q2QQA3 | 5e-77 | MAD20_ORYSJ; MADS-box transcription factor 20 | ||||
TrEMBL | A0A2S3HED3 | 0.0 | A0A2S3HED3_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Cb00838.1.p | 4e-92 | (Panicum virgatum) | ||||
STRING | Si025315m | 3e-93 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14643 | 21 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60910.1 | 1e-42 | AGAMOUS-like 8 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.C04144.1 |