PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C04084.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C3H
Protein Properties Length: 599aa    MW: 63229.3 Da    PI: 6.3954
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C04084.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.32.1e-06218239526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C+ f ++  C++Gd C +aHg
  Pahal.C04084.1 218 PCPEFKKGAGCRRGDMCEYAHG 239
                     8******88************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484033.37E-949132IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029712.43452123IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.9E-1052133IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.35188123IPR002110Ankyrin repeat
SMARTSM003569.8E-4213240IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-4216240IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.258218241IPR000571Zinc finger, CCCH-type
SMARTSM0035687249272IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.925249273IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 599 aa     Download sequence    Send to blast
MADASEAAAT VSARLLELAA EDDAAALGDL LAAHPSLADE PAPWYSPARG AEPMTPLMVA  60
AAYGSVSCLE VLLSPPHLVD PNRASPASLS TALHLAAAGG ASSAPAAVSR LLAAGADPTF  120
LDHLQRRPSD LVALPPNSLP LKNHLLSLLG ARKEWPPDPS LPDIKNGAYA SDDFRMYSFK  180
VRACSRAYSH DWTECPFVHP GENARRRDPR KYHYSCVPCP EFKKGAGCRR GDMCEYAHGV  240
FESWLHPAQY RTRLCKDGVG CARRVCFFAH TPEELRPLYV SSAGSRSAME MAAAMGMGLP  300
SPGASFTPPL SPSGGGTGVA GAWPQPNVPA LCLPGSAGNL HLSRLRTSLS ARSMAVDELL  360
ASAEYDGLVG SPASVRSARG KTLVPSNLDD LFSAEMAGAA ASHSPRYADQ GGAAFSPTRK  420
AAMRNQFQQQ QTLLSPRATA ATIIPEPVSP MSSRLLAALA QREKMQQQTL RNMSSRDLGS  480
DASVLVGSPV TSSWSKWGIP SGTPNWGADD EELGRLKRSS SFELRSGAKG DEPDLSWVNT  540
LVKEPTPEKP SINGTTAIES IGTMSQATSH EGIGGDEDNT AGVIGSWLEQ LQLDEMVV*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808908.10.0zinc finger CCCH domain-containing protein 67-like
SwissprotQ2QPW20.0C3H67_ORYSJ; Zinc finger CCCH domain-containing protein 67
TrEMBLA0A2S3HE790.0A0A2S3HE79_9POAL; Uncharacterized protein
STRINGGRMZM2G027298_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82337126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.11e-130CCCH-type zinc finger protein with ARM repeat domain