PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.C03611.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | WRKY | ||||||||
Protein Properties | Length: 487aa MW: 51518.8 Da PI: 7.9028 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 103.9 | 9.1e-33 | 199 | 257 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +DgynWrKYGqK+vkgse+prsYY+Ct+++C++kkkvers d+++++i+Y+g Hnh+k Pahal.C03611.1 199 EDGYNWRKYGQKQVKGSENPRSYYKCTYHSCSMKKKVERSLGDGRITQIVYKGAHNHPK 257 8********************************************************85 PP | |||||||
2 | WRKY | 105.8 | 2.3e-33 | 359 | 417 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYGqK+vkg+++prsYY+Ct++gCpv+k+ver+++d ++v++tYeg+Hnh+ Pahal.C03611.1 359 LDDGFRWRKYGQKVVKGNPNPRSYYKCTTPGCPVRKHVERASHDHRAVITTYEGKHNHD 417 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.3E-28 | 191 | 258 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 26.498 | 193 | 258 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.24E-26 | 196 | 258 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.5E-35 | 198 | 257 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.9E-24 | 199 | 256 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 9.3E-37 | 344 | 419 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.22E-29 | 351 | 419 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 37.987 | 354 | 419 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.9E-39 | 359 | 418 | IPR003657 | WRKY domain |
Pfam | PF03106 | 9.6E-26 | 360 | 417 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0010120 | Biological Process | camalexin biosynthetic process | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0010508 | Biological Process | positive regulation of autophagy | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0070370 | Biological Process | cellular heat acclimation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 487 aa Download sequence Send to blast |
MASSTGSLEH GGFTFTPPPF ITSFTELLSG SGDMLGADQE RSPRGLFHRG ARGGVPKFKS 60 AQPPSLPISP PPISPSSYFA IPAGLSPAEL LDSPVLLNSS SNILASPTTG AIPAQRFDWK 120 QAAELVASQQ EESRAAWGGF NDFSFHTASS NAMPTQTASF PSFKEEQQVE AVSKQSVAAA 180 TSNNKASSGN NNNSNTKLED GYNWRKYGQK QVKGSENPRS YYKCTYHSCS MKKKVERSLG 240 DGRITQIVYK GAHNHPKPLS TRRNSSGGVA AAEDKQAASS LSQAAGCGPE HSGATPENSS 300 VTFGDDEAEN GSQRSDGDEP DAKRWKEDGE NEGSSGGAGG KPVREPRLVV QTLSDIDILD 360 DGFRWRKYGQ KVVKGNPNPR SYYKCTTPGC PVRKHVERAS HDHRAVITTY EGKHNHDVPV 420 GRGAASRAAA APHASAAQPL LAAPMMAGGG QPYTLEMLGG AYGGGYAAAA AKDEPRDDLF 480 VDSLLC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 9e-37 | 187 | 419 | 1 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 9e-37 | 187 | 419 | 1 | 77 | Probable WRKY transcription factor 4 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator (PubMed:26025535). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:19199048, PubMed:26025535). Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (PubMed:15618416, PubMed:19199048, PubMed:26025535). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048, ECO:0000269|PubMed:26025535}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00299 | DAP | Transfer from AT2G38470 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:15618416, PubMed:19199048). Slightly down-regulated by gibberellic acid (GA) (PubMed:15618416). Accumulates in response to jasmonic acid (MeJA) (By similarity). {ECO:0000250|UniProtKB:Q6B6R4, ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KU058603 | 0.0 | KU058603.1 UNVERIFIED: Panicum miliaceum WRKY16-like gene, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025807559.1 | 0.0 | WRKY transcription factor WRKY24-like | ||||
Swissprot | Q6IEQ7 | 1e-119 | WRK24_ORYSJ; WRKY transcription factor WRKY24 | ||||
TrEMBL | A0A2S3HDE4 | 0.0 | A0A2S3HDE4_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ca01475.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8533 | 34 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38470.1 | 6e-93 | WRKY DNA-binding protein 33 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.C03611.1 |
Publications ? help Back to Top | |||
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