PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C03534.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C3H
Protein Properties Length: 450aa    MW: 47998.8 Da    PI: 8.2404
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C03534.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.59.1e-136387327
                    S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                    ++ C++++rtG C++G++CkF+H+p
  Pahal.C03534.1 63 EPDCSYYMRTGLCRFGATCKFNHPP 87
                    789********************97 PP
2zf-CCCH38.81.6e-12108132327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C+++++tGtCk+G++CkF+H++
  Pahal.C03534.1 108 QPECQYYLKTGTCKFGATCKFHHPR 132
                     799********************96 PP
3zf-CCCH314.3e-10154178327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C +++rtG+Ck+ ++CkF+H+p
  Pahal.C03534.1 154 EKECAYYLRTGQCKFASTCKFHHPP 178
                     679********************97 PP
4zf-CCCH406.6e-13315340227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++C+f+++tG Ck+G+ CkF+H++
  Pahal.C03534.1 315 DQPECQFYMKTGDCKFGAVCKFNHPK 340
                     689*********************96 PP
5zf-CCCH37.54e-12360386127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++ C f++r+G+Ck+G++CkF H++
  Pahal.C03534.1 360 PGEPVCTFYSRYGICKFGPNCKFDHPM 386
                     5789*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.9486088IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-66087IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-106387IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-56588IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-46686IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.441105133IPR000571Zinc finger, CCCH-type
SMARTSM003567.7E-6105132IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-6107134IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-10108132IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-5111133IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.13E-5150179IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.587151179IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-4151178IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-7154178IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.455313341IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-5313340IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-9315340IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-5316342IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.0E-5319341IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-6357385IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-6359386IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.38360387IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-9361386IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-4364384IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MAAAGAGAAG GGGGTGGGEG SSSPAGVAIG PHHHGAAEEA MWQMTLGGGE SMEHGPFPER  60
IGEPDCSYYM RTGLCRFGAT CKFNHPPNRK LAVAAARMKG EYPYRVGQPE CQYYLKTGTC  120
KFGATCKFHH PREKAAIATR VQLNVLGYPI RPNEKECAYY LRTGQCKFAS TCKFHHPPPS  180
NTMVAVRGSI YSPGQSATSP GQHTYPGAVT NWTLSRSASF IASPRWPGHS GYAQVIVPQG  240
LVQVPGWNPY AAQMGSSSPD DQQRTPGTTQ YYASSHQSET TGMGEHGMYP SYQAGSVPVG  300
LYAVQGENIF PERPDQPECQ FYMKTGDCKF GAVCKFNHPK ERLIPAPNCA LSPLGLPLHP  360
GEPVCTFYSR YGICKFGPNC KFDHPMGTLM YAAATSPTGD APTMHYQLAS SPGHSERLLD  420
GGSGRSHRIS QTDSQQIPSG NGSTEREAS*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810066.10.0zinc finger CCCH domain-containing protein 66
SwissprotQ2QT650.0C3H66_ORYSJ; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A2S3HDM20.0A0A2S3HDM2_9POAL; Uncharacterized protein
STRINGOPUNC12G08520.30.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-155zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]