PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C03503.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 313aa    MW: 34561.9 Da    PI: 6.7606
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C03503.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.4e-056587123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C+ Cg+ F++   L  H+++H
  Pahal.C03503.1 65 YSCSFCGREFRSAQALGGHMNVH 87
                    99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.37E-66291No hitNo description
Gene3DG3DSA:3.30.160.602.6E-46389IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139124.2E-66588IPR007087Zinc finger, C2H2
SMARTSM003550.0026587IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.2176592IPR007087Zinc finger, C2H2
PROSITE patternPS0002806787IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0048441Biological Processpetal development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MDPARYWMLN RRKLSDHKEA LFTTAIAVGR GGSSSASYYG SWEERAFDED SAGHLGGYIW  60
PPRSYSCSFC GREFRSAQAL GGHMNVHRRD RARLKLAGVA DDGETDNQIM SDHQSYLIQP  120
CPPQIAALQQ AYGVKSSASS TETNPNLICS VLPCPSRSYV QAATRRTVWG EQVSSTPISS  180
LQAYNIDYGK KEVILDASQL SQDARPKEKM CSKMELDGGR CELKLSVLGC RTRRDFGASD  240
DDEIFQATCK RKTVDLEASS LVLYSSHEKL QEVDKYDGDE KPNGAKVLKL CPSSPIEELD  300
LELRLGAMPK TL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-126087229superman protein
2l1o_A2e-126087229Transcriptional regulator SUPERMAN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809907.10.0probable transcriptional regulator RABBIT EARS
TrEMBLA0A2S3HD580.0A0A2S3HD58_9POAL; Uncharacterized protein
STRINGSi024070m1e-172(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95942840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.19e-25C2H2 family protein