PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.C02832.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Dof

Protein Properties

Length: 354aa MW: 37607.6 Da PI: 7.3794

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.C02832.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.3	7.1e-38	69	124	5	60
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 a +cprCds ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rkn++ Pahal.C02832.1 69 APSCPRCDSPNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRR 124 568***************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-27	66	124	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.891	70	124	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	9.3E-32	71	124	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	72	108	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MKLSSSSRLA ESSEILLLPP HQQRRSGIVV TRMLSSHCDN GALMPYAAAG RRAAALLDHR 60 RYRPKVEVAP SCPRCDSPNT KFCYYNNYSL SQPRYFCKGC RRYWTKGGSL RNVPVGGGCR 120 KNRRGKPVRP MPVAGAVAAG SAGGAAAAFA HRSSFPCTLR PDLLLEGMVG SPAGGLCQPM 180 DATDRPAVVQ GSTIDLALLY AKFLNHQPAA VEQCAILPES LDTSSGSSSD MSPNIPPPDH 240 HPFARQDGFV ELSAPASADP RAAAQQCPHA RTEVLGELIS FSVDQSCFDS LGLPTDDGDL 300 ILPSTWHPEA KYEPFDPLPE DAAMSLQGGS SSGDDLWSSA LACQGLEAAL CRP*

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MKLSSSSRLA ESSEILLLPP HQQRRSGIVV TRMLSSHCDN GALMPYAAAG RRAAALLDHR  60
RYRPKVEVAP SCPRCDSPNT KFCYYNNYSL SQPRYFCKGC RRYWTKGGSL RNVPVGGGCR  120
KNRRGKPVRP MPVAGAVAAG SAGGAAAAFA HRSSFPCTLR PDLLLEGMVG SPAGGLCQPM  180
DATDRPAVVQ GSTIDLALLY AKFLNHQPAA VEQCAILPES LDTSSGSSSD MSPNIPPPDH  240
HPFARQDGFV ELSAPASADP RAAAQQCPHA RTEVLGELIS FSVDQSCFDS LGLPTDDGDL  300
ILPSTWHPEA KYEPFDPLPE DAAMSLQGGS SSGDDLWSSA LACQGLEAAL CRP*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT087262	1e-115	BT087262.1 Zea mays full-length cDNA clone ZM_BFb0021J09 mRNA, complete cds.
GenBank	JX428477	1e-115	JX428477.1 Zea mays subsp. mays clone pUT3073 DOF20 C2C2-DOF type transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025808971.1	0.0	uncharacterized protein LOC112887095
TrEMBL	A0A2T7ED78	0.0	A0A2T7ED78_9POAL; Uncharacterized protein
STRING	Pavir.J00767.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2659	36	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52440.1	4e-35	Dof family protein

Link Out ? help Back to Top
Phytozome	Pahal.C02832.1