PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.C02821.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NAC | ||||||||
Protein Properties | Length: 259aa MW: 28408.6 Da PI: 5.4933 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 129.5 | 2.5e-40 | 5 | 136 | 1 | 127 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 l+pGfrF Pt+eelv++yL++k++g + ++e+vi+ +d+ ++Pw+Lp+ ++++ + w++F++r++++a+g r++r+t sgyWka g+ Pahal.C02821.1 5 LAPGFRFYPTEEELVCFYLRNKLDGVRrGDIERVIPVADVSALDPWQLPEahrgAFSGAVEPWFYFCPRQEREARGGRPSRTTPSGYWKAAGTPG 99 579*********************9886677789**************95455555557789********************************* PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyr 127 v++++g+ +g+kkt+vfy+grap g kt+W ++ey+ Pahal.C02821.1 100 LVYAADGRPIGTKKTMVFYRGRAPAGAKTKWKLNEYK 136 ************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.27E-43 | 4 | 169 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 45.793 | 5 | 169 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.8E-22 | 7 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MAGDLAPGFR FYPTEEELVC FYLRNKLDGV RRGDIERVIP VADVSALDPW QLPEAHRGAF 60 SGAVEPWFYF CPRQEREARG GRPSRTTPSG YWKAAGTPGL VYAADGRPIG TKKTMVFYRG 120 RAPAGAKTKW KLNEYKALEV EDEDAAGVPA PSHALQTRSE FTLCRLYTQS GCPRQFDRRP 180 SAAAAVGGGS ENPTAAAALA NGEEMGRKRK RAPPSDDDTT SSDGDGSTQQ ILRQRGTDSE 240 GLNDDMAYWS EFLDYDWL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-30 | 5 | 169 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-30 | 5 | 169 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-30 | 5 | 169 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-30 | 5 | 169 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-30 | 5 | 169 | 20 | 168 | NAC domain-containing protein 19 |
3swm_B | 2e-30 | 5 | 169 | 20 | 168 | NAC domain-containing protein 19 |
3swm_C | 2e-30 | 5 | 169 | 20 | 168 | NAC domain-containing protein 19 |
3swm_D | 2e-30 | 5 | 169 | 20 | 168 | NAC domain-containing protein 19 |
3swp_A | 2e-30 | 5 | 169 | 20 | 168 | NAC domain-containing protein 19 |
3swp_B | 2e-30 | 5 | 169 | 20 | 168 | NAC domain-containing protein 19 |
3swp_C | 2e-30 | 5 | 169 | 20 | 168 | NAC domain-containing protein 19 |
3swp_D | 2e-30 | 5 | 169 | 20 | 168 | NAC domain-containing protein 19 |
4dul_A | 1e-30 | 5 | 169 | 17 | 165 | NAC domain-containing protein 19 |
4dul_B | 1e-30 | 5 | 169 | 17 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 205 | 211 | GRKRKRA |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP099084 | 1e-143 | FP099084.1 Phyllostachys edulis cDNA clone: bphyem111h11, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025809342.1 | 0.0 | NAC domain-containing protein 90-like | ||||
Swissprot | Q9FMR3 | 1e-65 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A2S3HBL8 | 0.0 | A0A2S3HBL8_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J04751.1.p | 1e-158 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1005 | 38 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 6e-68 | NAC domain containing protein 90 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.C02821.1 |
Publications ? help Back to Top | |||
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