PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C02810.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 392aa    MW: 42876.1 Da    PI: 7.484
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C02810.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-05213232120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     ++C+ C k+F+r  n++ H+
  Pahal.C02810.1 213 FVCHVCRKTFNRYNNMQMHM 232
                     89*****************9 PP
2zf-C2H212.20.00055299321123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C  Cgk+F  k + ++H +++
  Pahal.C02810.1 299 FGCRRCGKPFAVKGDWRTHEKNC 321
                     56*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.28E-5209236No hitNo description
Gene3DG3DSA:3.30.160.603.0E-4213232IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.972213240IPR007087Zinc finger, C2H2
PROSITE patternPS000280215235IPR007087Zinc finger, C2H2
SuperFamilySSF576676.08E-5283319No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MVLRACAMEG AAAAGGSFGV PYYEWLKPRS SSSPPPSPSS SSSTSSTLST PSIDHSAVDG  60
HGRDAMMCLP LLGRLEGRAT TPDRGQNPVK EELMMSNITA TTGARGGATA GVDLNIGLPA  120
IGGYSSEEAP IDDEDNEEEE EEEEEEEEKP RKCKEEEAGE QANSEMAVES VEGAEPDYLR  180
VDGEDGIRGF VDSRGRRYWI PTQAQILVGP VQFVCHVCRK TFNRYNNMQM HMWGHGREYR  240
KGPESLKGTQ AATLALLKLP CYCCAPGCRN SVAHPRARPL KDFRTLQTHY KRKHGDKRFG  300
CRRCGKPFAV KGDWRTHEKN CGKRWFCACG SDFKHKRSLN DHVRSFGGGH LPVAPDQQAA  360
AAVPPLLKPK ERIIRFDQAA APWNGAHAAH A*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1026581e-174AK102658.1 Oryza sativa Japonica Group cDNA clone:J033101H19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804775.10.0protein TRANSPARENT TESTA 1-like
SwissprotQ8W0315e-94ZWIP5_ARATH; Zinc finger protein WIP5
TrEMBLA0A2S3HBL40.0A0A2S3HBL4_9POAL; Uncharacterized protein
STRINGPavir.J11927.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44723667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51220.12e-91WIP domain protein 5
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]