PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C02794.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 455aa    MW: 49093.5 Da    PI: 5.1631
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C02794.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.51.1e-16136182148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg WT+ Ed +l ++v++ G + W++Ia+ ++ gR +kqc++rw+++l
   Pahal.C02794.1 136 RGLWTPNEDSKLRELVNEQGEKKWSKIAKDLP-GRIGKQCRERWLNHL 182
                      788*****************************.*************97 PP
2Myb_DNA-binding44.73.2e-14192231445
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      WT+eEd+ lv  +++lG+  W+  a++++ gR ++++k++w+
   Pahal.C02794.1 192 WTEEEDLMLVAWHRKLGPS-WAEMAKHIP-GRPENSLKNHWN 231
                      *****************66.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.538131186IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.6E-23134184IPR009057Homeodomain-like
SMARTSM007171.4E-15135184IPR001005SANT/Myb domain
SuperFamilySSF466897.91E-27136230IPR009057Homeodomain-like
PfamPF002496.9E-16136182IPR001005SANT/Myb domain
CDDcd001671.57E-14139182No hitNo description
Gene3DG3DSA:1.10.10.607.2E-16185233IPR009057Homeodomain-like
PROSITE profilePS5129415.285187238IPR017930Myb domain
SMARTSM007171.1E-10188236IPR001005SANT/Myb domain
CDDcd001678.10E-11192231No hitNo description
PfamPF002495.6E-12192231IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MFREPVPTER TTPSTRIGAT SRSLLRELIT GTLPGPDLYI PEENQGGDMY GTSPYPLIAT  60
GDVHLHGSNH IAQDGKVPQQ DATRFMGAGY FDSGNAICSN QALMENTIPS ESSAVTIDMA  120
ASQAYAEEDA ATHNERGLWT PNEDSKLREL VNEQGEKKWS KIAKDLPGRI GKQCRERWLN  180
HLKPGIKKDT FWTEEEDLML VAWHRKLGPS WAEMAKHIPG RPENSLKNHW NATRRHVWKN  240
RETIEMAVKD GTHPNVLVVY MVRECGVLKG AGAPASASDP PVPDPVPDGW QADDNPAATE  300
PSPGSNSPDQ CWLPMLCGGM LPPPIMEAPA PLPDHNNVES CVYATYDADG YVRYVHLQPT  360
PGHDGYAPAN QVAAAAEAAG YYNPLTFPYN PFAGQQVYAP EDGTSHYYSN SGAGGDEAHG  420
NAGSVSAAPE LAGMPFSGNA PAAQHNQRGR GGAI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C9e-351362354102C-Myb DNA-Binding Domain
1msf_C9e-351362354102C-Myb DNA-Binding Domain
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806726.10.0uncharacterized protein LOC112885291
TrEMBLA0A2S3HBI90.0A0A2S3HBI9_9POAL; Uncharacterized protein
STRINGPavir.J19808.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2759645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27785.15e-38myb domain protein 118