PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.C02517.2

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

G2-like

Protein Properties

Length: 266aa MW: 29360.1 Da PI: 7.7297

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.C02517.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103.7	1.1e-32	45	99	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt++LH+rFv+a++qLGG+++AtPk +l +m+v+g+t++hvkSHLQkYRl Pahal.C02517.2 45 KQRLRWTSDLHNRFVDAIAQLGGPDRATPKGVLTVMGVPGITIYHVKSHLQKYRL 99 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.742	42	102	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	7.4E-31	43	100	IPR009057	Homeodomain-like
SuperFamily	SSF46689	9.85E-17	44	99	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.7E-25	45	100	IPR006447	Myb domain, plants
Pfam	PF00249	2.7E-7	47	98	IPR001005	SANT/Myb domain
Pfam	PF14379	8.3E-24	132	177	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MMYHAKNFSV PFAPQRAQNN EHASNIGAIS GANISNPANP VGSGKQRLRW TSDLHNRFVD 60 AIAQLGGPDR ATPKGVLTVM GVPGITIYHV KSHLQKYRLA KYIPESPAEG SKDEKKDSGD 120 SLSNTDSAPG LQINEALKMQ MEVQKRLHEQ LEVQRQLQLR IEAQGRYLQM IIEEQQKLGG 180 SIKASDDQKL SHSPPSLDEY PESTQPSPKK PRVDALSPDS KRDTTQAEFE PHLIGPWDQE 240 ICRKNLCGVA FPVEEFKADP GMSKS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-22	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-22	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-22	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-22	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-22	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-22	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-22	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-22	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU975261	0.0	EU975261.1 Zea mays clone 485946 MYB transcription factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025809946.1	0.0	myb family transcription factor PHL7-like
Refseq	XP_025809947.1	0.0	myb family transcription factor PHL7-like
Refseq	XP_025809948.1	0.0	myb family transcription factor PHL7-like
Swissprot	Q9SJW0	6e-73	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	A0A2T8KJ35	0.0	A0A2T8KJ35_9POAL; Uncharacterized protein
STRING	Pavir.J05174.1.p	0.0	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	8e-60	G2-like family protein

Link Out ? help Back to Top
Phytozome	Pahal.C02517.2