PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.C02498.2

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NF-YC

Protein Properties

Length: 358aa MW: 38346.9 Da PI: 6.0944

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.C02498.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	52	1.5e-16	37	115	20	98
NF-YC 20 elPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++ rikki++adedv +i+ +Pvl+ska elf+ +l r++ + + +t+ s ++++++ +++dfl ++v + Pahal.C02498.2 37 HFSAPRIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYDITIRKGVKTVGSSHLKQCIQAYNVYDFLREVVSK 115 56778*********************************************************************99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.3E-21	33	101	IPR009072	Histone-fold
Pfam	PF00808	9.9E-15	42	100	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	3.24E-18	47	117	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
MRKKLDTRFP ALVKKLCAGE EISGTVSGTM RKKLDPHFSA PRIKKIMQAD EDVGKIALAV 60 PVLVSKALEL FLQDLCDRTY DITIRKGVKT VGSSHLKQCI QAYNVYDFLR EVVSKVPDTS 120 TSDAIVDDKL GKRRKSEEDG SEEELKRTRN DAERHTSNGR GCRRGRGRGR RGGRGAWREA 180 VTTHEQFVEN QSSKPAGLKV EIADEISDVT EAKEATPVSS ARACLRNIDL NLDPVDEDDD 240 GVTVPPQAQS SAPATNSAAA NLGLTAPATS SAAANLGLTA PATSSAAANL GLTAPATSSA 300 AATAGPSVPR LKEGAKLKEF LGGWELPDMN KMDMDPAQFA LSSNHKLDDD EDYDNEN*

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

MRKKLDTRFP ALVKKLCAGE EISGTVSGTM RKKLDPHFSA PRIKKIMQAD EDVGKIALAV  60
PVLVSKALEL FLQDLCDRTY DITIRKGVKT VGSSHLKQCI QAYNVYDFLR EVVSKVPDTS  120
TSDAIVDDKL GKRRKSEEDG SEEELKRTRN DAERHTSNGR GCRRGRGRGR RGGRGAWREA  180
VTTHEQFVEN QSSKPAGLKV EIADEISDVT EAKEATPVSS ARACLRNIDL NLDPVDEDDD  240
GVTVPPQAQS SAPATNSAAA NLGLTAPATS SAAANLGLTA PATSSAAANL GLTAPATSSA  300
AATAGPSVPR LKEGAKLKEF LGGWELPDMN KMDMDPAQFA LSSNHKLDDD EDYDNEN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	6e-19	31	101	5	75	Transcription Regulator NC2 alpha chain
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025807206.1	0.0	dr1-associated corepressor homolog isoform X2
TrEMBL	A0A2S3HAV9	0.0	A0A2S3HAV9_9POAL; Uncharacterized protein
STRING	Pavir.J00079.1.p	1e-176	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	3e-49	nuclear factor Y, subunit C11

Link Out ? help Back to Top
Phytozome	Pahal.C02498.2