PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.C02498.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NF-YC | ||||||||
Protein Properties | Length: 417aa MW: 44682.8 Da PI: 6.6086 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 51.8 | 1.8e-16 | 96 | 174 | 20 | 98 |
NF-YC 20 elPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++ rikki++adedv +i+ +Pvl+ska elf+ +l r++ + + +t+ s ++++++ +++dfl ++v + Pahal.C02498.1 96 HFSAPRIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYDITIRKGVKTVGSSHLKQCIQAYNVYDFLREVVSK 174 56778*********************************************************************99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.5E-21 | 92 | 160 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.3E-14 | 101 | 159 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 4.0E-18 | 106 | 176 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 417 aa Download sequence Send to blast |
MPPNPQSHQD SLFNVSCSSP RDPMSAAALP AASDRNPSPG AHRRGGDFRS WSSLLGRRRR 60 HEEEAGHPLP RLKKLCAGEE ISGTVSGTMR KKLDPHFSAP RIKKIMQADE DVGKIALAVP 120 VLVSKALELF LQDLCDRTYD ITIRKGVKTV GSSHLKQCIQ AYNVYDFLRE VVSKVPDTST 180 SDAIVDDKLG KRRKSEEDGS EEELKRTRND AERHTSNGRG CRRGRGRGRR GGRGAWREAV 240 TTHEQFVENQ SSKPAGLKVE IADEISDVTE AKEATPVSSA RACLRNIDLN LDPVDEDDDG 300 VTVPPQAQSS APATNSAAAN LGLTAPATSS AAANLGLTAP ATSSAAANLG LTAPATSSAA 360 ATAGPSVPRL KEGAKLKEFL GGWELPDMNK MDMDPAQFAL SSNHKLDDDE DYDNEN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_A | 1e-18 | 90 | 160 | 5 | 75 | Transcription Regulator NC2 alpha chain |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025807205.1 | 0.0 | uncharacterized protein LOC112885778 isoform X1 | ||||
TrEMBL | A0A2T7EC65 | 0.0 | A0A2T7EC65_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J00079.1.p | 1e-175 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2172 | 36 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12480.1 | 7e-49 | nuclear factor Y, subunit C11 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.C02498.1 |