PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C02443.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 342aa    MW: 36851.1 Da    PI: 6.8506
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C02443.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.61.4e-052332701254
                     HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     R +++ +++  L++l+ +      +K + a++L +A+eYI+ L
  Pahal.C02443.2 233 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIRFL 270
                     677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.036221270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.8E-12231291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.31E-6231275No hitNo description
SMARTSM003530.0087232276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-9235284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MADEWWSSAR TGDGASACST NQDADESAAT SATETDYFRP SFHVGAAAAA STPSFLADPA  60
PHMVNWTQAY MSGGRAAGAE ATTGFNALLQ LHGDDAGRYF LLDQQPDVVD GAEPVAPAAA  120
SRSVHLYADN QYSSYGDVPA APMTKPFSQQ QHFSGLFGSS TRNFSDMPSA LPMTTKPLLL  180
QAWEHKAFKS NKEPVQDTCS SATRRSVPEN SPPAAAKKPR IATPSPLPTF KVRKEKLGDR  240
ITALQQLVSP FGKTDTASVL HEAIEYIRFL HHQVASLSSP YLRCGRPVQQ LQQQQIKEGC  300
EAKEDLRSRG LCLVPVASTY AVAASETAPE FWHPTFGGRF R*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0695467e-72BT069546.1 Zea mays full-length cDNA clone ZM_BFb0158B10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806482.10.0transcription factor bHLH112-like isoform X2
TrEMBLA0A2S3HAQ50.0A0A2S3HAQ5_9POAL; Uncharacterized protein
STRINGPavir.J10443.1.p1e-177(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.15e-46bHLH family protein