PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C02324.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ARF
Protein Properties Length: 682aa    MW: 74370.6 Da    PI: 6.7726
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C02324.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3758.7e-24130231199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae++       ++ +  s++l+ +d++g +W++++iyr++++r++lt+GW++F + ++L +gD v+F   + +
  Pahal.C02324.1 130 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyeQLRP--SQELVAKDLHGMKWRFRHIYRGQPRRHLLTTGWSSFINKKKLVSGDAVLFL--RGN 220
                     99****************************9866664..459************************************************..448 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     ++el+++v+r+
  Pahal.C02324.1 221 DGELRLGVRRA 231
                     9999****996 PP
2Auxin_resp99.83.8e-33256337183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     +a++++++s+F++++nPr+++seF+v++ k++k+l++++s+GmRfk+   +ed+++r+  G+++g++++d++rWp+SkWr+L+
  Pahal.C02324.1 256 VASSLENRSIFHICFNPRTGASEFIVPYCKFLKSLNCPLSIGMRFKVGCKNEDANQRS-CGLISGINEVDSIRWPGSKWRCLQ 337
                     578899**************************************************99.8**********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.36E-44120268IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.2E-38127233IPR015300DNA-binding pseudobarrel domain
CDDcd100171.28E-21128230No hitNo description
PfamPF023629.3E-22130231IPR003340B3 DNA binding domain
PROSITE profilePS5086313.112130232IPR003340B3 DNA binding domain
SMARTSM010192.0E-23130232IPR003340B3 DNA binding domain
PfamPF065072.1E-27257337IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 682 aa     Download sequence    Send to blast
MGIDLNAVED DKPAGAVCGE LWHACAGAGL VLPRRGSAVV YLPQAHLAGD GDGGEVPAGA  60
AVRVPPHVVC RVVDVELRAD AATDEVYARL ALVAEGKMFD RNIHDGETEE KNCEMEDGDG  120
EKKPWTSHMF CKTLTASDTS THGGFSVPRR AAEDCFPPLD YEQLRPSQEL VAKDLHGMKW  180
RFRHIYRGQP RRHLLTTGWS SFINKKKLVS GDAVLFLRGN DGELRLGVRR AVQLKNEALL  240
EAVSSTDSKL RTLSAVASSL ENRSIFHICF NPRTGASEFI VPYCKFLKSL NCPLSIGMRF  300
KVGCKNEDAN QRSCGLISGI NEVDSIRWPG SKWRCLQVKW DGDTKCNHQN RVSPWEIERV  360
GSSISVPHCL SSSVSKRTKL CFPQGDLDAP ILDGNGRPDS METECFHWVL QGQELVRSRA  420
QGVACSHSSD TPKCQSSYER RFSADVWNCK MNDAMSGLRH RNATGFAYQP LVFGESFRFS  480
EVLQGQEMSR AVPSFPGAAF GARAQNGRIG SFDYVQRSAA TQGYPLQQFN PPATEAHSPS  540
SVLMVNQTTA LQPELEGMAN LGEANGSRYA PIATQREAET WPSAQQQRAR ENGSELFDAT  600
EASAPAAVTK PGLADRGVRQ SSCRLFGFSL TDEILGAEED GAKENYEAAQ QTPRVLDLFG  660
HGQSTPSALP LHALCAAPLG I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A6e-991236210357Auxin response factor 1
4ldy_B6e-991236210357Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807096.10.0auxin response factor 14-like isoform X1
SwissprotQ0DGS10.0ARFN_ORYSJ; Auxin response factor 14
TrEMBLA0A2S3HAF90.0A0A2S3HAF9_9POAL; Auxin response factor
STRINGGRMZM2G441325_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51132756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-142ARF family protein
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]