PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.C02317.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

VOZ

Protein Properties

Length: 599aa MW: 65689.4 Da PI: 5.3421

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.C02317.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	410.6	3e-126	275	492	1	217
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalne.glpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaae 94 p+ps++lgpkcalwdc rp+ gse+ dyc+ +ha laln+ gl+gt+pv+rp+gidlkdg+lf+al akvqgk+vgip+c gaat+kspwna+e Pahal.C02317.1 275 PSPSQYLGPKCALWDCGRPVGGSEDSGDYCNPYHAGLALNDdGLLGTRPVMRPRGIDLKDGPLFSALIAKVQGKNVGIPVCGGAATSKSPWNAPE 369 89************************************9799*********************************************** PP VOZ 95 lfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrlelkl 189 lfdlsllege++rewlffd+prrafesgnrkqrslpdy+grgwhesrkqvmk+f+glkrsyymdpqpsss+ewhl+eyein +dalalyrle+k+ Pahal.C02317.1 370 LFDLSLLEGESLREWLFFDTPRRAFESGNRKQRSLPDYNGRGWHESRKQVMKDFAGLKRSYYMDPQPSSSHEWHLFEYEINASDALALYRLEYKS 464 ******************************************************************************************* PP VOZ 190 vdekksakgkvskdsladlqkklgrlta 217 +d+kk ak+k++++sl+++q++++rlta Pahal.C02317.1 465 SDSKKGAKSKLASSSLTEIQQQMVRLTA 492 ************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 599 aa Download sequence Send to blast
MAGDPAAGGG GGAHPASGGK GSRSSTRHRQ FRDRAKNRVD DLQEMFSGLQ SARKESRSAD 60 AAVLEEQVHQ MLREWRAELS VPSPASSLQN SQGNNREASD PPSETLRLLQ LAVAEEEDDA 120 TSMLAVPRSP QQAPAFHQNQ GQGHGQEVQM PNLNQQCEVV AGGAAPSQQS LGQGVQEDCG 180 EVAAVANAMF NEQMYYIDHE LSIDDFLQDD DYKINLPGSN EDHFNNLHGI GPLEHEQFDL 240 PLDVPPDSYI DANNSEQNTG DVFVHMSDLL TTIWPSPSQY LGPKCALWDC GRPVGGSEDS 300 GDYCNPYHAG LALNDDGLLG TRPVMRPRGI DLKDGPLFSA LIAKVQGKNV GIPVCGGAAT 360 SKSPWNAPEL FDLSLLEGES LREWLFFDTP RRAFESGNRK QRSLPDYNGR GWHESRKQVM 420 KDFAGLKRSY YMDPQPSSSH EWHLFEYEIN ASDALALYRL EYKSSDSKKG AKSKLASSSL 480 TEIQQQMVRL TADSPVENKR TARSKPKANH KDTNAKAFAH VNTPSQVNSS NAYQAAPQVN 540 QMTFLNENVV YGPHLPHSEN VVYGPHLPHS ENIVYGPHLP HGYSAEGSSY FWNPRDGT*

Sequence ? help Back to Top

Protein Sequence Length: 599 aa Download sequence Send to blast

MAGDPAAGGG GGAHPASGGK GSRSSTRHRQ FRDRAKNRVD DLQEMFSGLQ SARKESRSAD  60
AAVLEEQVHQ MLREWRAELS VPSPASSLQN SQGNNREASD PPSETLRLLQ LAVAEEEDDA  120
TSMLAVPRSP QQAPAFHQNQ GQGHGQEVQM PNLNQQCEVV AGGAAPSQQS LGQGVQEDCG  180
EVAAVANAMF NEQMYYIDHE LSIDDFLQDD DYKINLPGSN EDHFNNLHGI GPLEHEQFDL  240
PLDVPPDSYI DANNSEQNTG DVFVHMSDLL TTIWPSPSQY LGPKCALWDC GRPVGGSEDS  300
GDYCNPYHAG LALNDDGLLG TRPVMRPRGI DLKDGPLFSA LIAKVQGKNV GIPVCGGAAT  360
SKSPWNAPEL FDLSLLEGES LREWLFFDTP RRAFESGNRK QRSLPDYNGR GWHESRKQVM  420
KDFAGLKRSY YMDPQPSSSH EWHLFEYEIN ASDALALYRL EYKSSDSKKG AKSKLASSSL  480
TEIQQQMVRL TADSPVENKR TARSKPKANH KDTNAKAFAH VNTPSQVNSS NAYQAAPQVN  540
QMTFLNENVV YGPHLPHSEN VVYGPHLPHS ENIVYGPHLP HGYSAEGSSY FWNPRDGT*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT039629	0.0	BT039629.1 Zea mays full-length cDNA clone ZM_BFc0035D15 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025808296.1	0.0	transcription factor VOZ1-like
TrEMBL	A0A2S3HAS6	0.0	A0A2S3HAS6_9POAL; Uncharacterized protein
STRING	Pavir.Ca01693.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2343	38	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	1e-135	vascular plant one zinc finger protein

Link Out ? help Back to Top
Phytozome	Pahal.C02317.1