PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.C02274.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | GATA | ||||||||
Protein Properties | Length: 393aa MW: 40150.9 Da PI: 6.0855 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 56.2 | 4.8e-18 | 258 | 292 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +C t kTp+WR gp g+ktLCnaCG++y++ +l Pahal.C02274.1 258 CLHCETDKTPQWRTGPLGPKTLCNACGVRYKSGRL 292 99*****************************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.50.10 | 8.1E-15 | 251 | 289 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE profile | PS50114 | 12.387 | 252 | 288 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 2.3E-17 | 252 | 302 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.52E-15 | 254 | 315 | No hit | No description |
CDD | cd00202 | 3.84E-13 | 257 | 304 | No hit | No description |
Pfam | PF00320 | 7.9E-16 | 258 | 292 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 258 | 283 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 393 aa Download sequence Send to blast |
MEVPAECAGG GRVKKEADLF LVDDLLDLPC DDEEEEVQEA VVEGGGGEGS KAGDCGTGAG 60 GGGGEDGAAG NASNDSSTVT ALDSCSNSIS GLADGDFSGG LCEPYDQLAE LEWLSNYMGE 120 DNFPTEDLKK LQLITGIPPA SASAATASVP APAPAAAATQ PGGGVLSPEA PVPGKARSKR 180 SRVAPCSWAS RLLVLPPTPA SPPSPASAAI SPSESGTAAP AFPAKKPSKP TKKKEAPTTS 240 APNTAAAAAA SAGEGRRCLH CETDKTPQWR TGPLGPKTLC NACGVRYKSG RLVPEYRPAA 300 SPTFVVSKHS NSHRKVLELR RQKESYPHPH PHPHPHHQYQ PQPQALGHVG AGAAAGLMHA 360 PGPLLLDGPA GPLIGDDFLI HNRIGPDFRQ LI* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025805277.1 | 0.0 | GATA transcription factor 12-like | ||||
TrEMBL | A0A2S3HAC4 | 0.0 | A0A2S3HAC4_9POAL; GATA transcription factor | ||||
STRING | Pavir.J33978.1.p | 1e-170 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3025 | 31 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25830.1 | 9e-44 | GATA transcription factor 12 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.C02274.1 |