PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.C02228.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | WRKY | ||||||||
Protein Properties | Length: 217aa MW: 23225.2 Da PI: 9.6555 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 103.7 | 1e-32 | 129 | 187 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s +prsYYrCt+++C+vkk+v+r a+d+++v++tYeg Hnh+ Pahal.C02228.1 129 LDDGYRWRKYGQKAVKNSAYPRSYYRCTHHTCNVKKQVQRLARDTSIVVTTYEGVHNHP 187 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.0E-33 | 115 | 187 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.68E-29 | 121 | 188 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.977 | 124 | 189 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.6E-38 | 129 | 188 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.8E-26 | 130 | 187 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MEDSQRGGSQ QPNPQLPGFL ASPVAAAPQL VPQACTSGTG GALSCPPAAL DWASLLLPRA 60 PGSLHDVRAT TSQEQAMAGA SGCSSSTAGD GDGETEAGKK GGGTRGNKKK KKPSRPRFAF 120 QTRSENDILD DGYRWRKYGQ KAVKNSAYPR SYYRCTHHTC NVKKQVQRLA RDTSIVVTTY 180 EGVHNHPCEK LMEALSPILK QLQLLSQLQC STNQLI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 9e-26 | 119 | 186 | 7 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 9e-26 | 119 | 186 | 7 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU958074 | 1e-129 | EU958074.1 Zea mays clone 1671428 WRKY23 - superfamily of TFs having WRKY and zinc finger domains mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025806667.1 | 1e-161 | probable WRKY transcription factor 48 | ||||
TrEMBL | A0A2S3HAK7 | 1e-159 | A0A2S3HAK7_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ca01507.1.p | 2e-96 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1100 | 38 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41570.1 | 1e-46 | WRKY DNA-binding protein 24 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.C02228.1 |