PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C02208.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HSF
Protein Properties Length: 455aa    MW: 50569.7 Da    PI: 4.5925
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C02208.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.17.8e-35211122102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl k+ye++ed+++++++sw   g sfvv+++ +f++++LpkyFkh+nf+SF+RQLn+YgF+k++ e+         weF+++ F +g+++ll++
  Pahal.C02208.1  21 FLIKTYEMVEDPATNHVVSWGPGGASFVVWNPPDFSRDLLPKYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANEDFIRGHTHLLKN 106
                     9****************************************************************999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i+r+k 
  Pahal.C02208.1 107 IHRRKP 112
                     ***985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.5E-3917110IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004159.9E-6317110IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.67E-3617110IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004476.7E-3121110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.2E-202144IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.2E-205971IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406084IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.2E-207284IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MEGSSGGAGG GGGGSGSPPP FLIKTYEMVE DPATNHVVSW GPGGASFVVW NPPDFSRDLL  60
PKYFKHNNFS SFIRQLNTYG FRKIDPERWE FANEDFIRGH THLLKNIHRR KPVHSHSLQN  120
QVNGPLAESE RRELEDEINR LKYEKSLLLA DLQRQNQQQY GINWQMQSLE DRLVQMEQRQ  180
RNIVASLCDI LQRHRVVSAS MLETDHFSKK RRVPKIDFFV DEPAVEEQQV PFLQTLGAEA  240
PSMSPGHLLN AEPFEKMELA LVSLENFFQK AGHGSAEEMY GGAAEPSPDL TLGEMNSAPM  300
DTNINQQSSD GLNPFSSTTE HAHFPSSLAE SLSYAPSPIL TLSDINEDAH RTAEVDMNSE  360
TTTGDTSQDT TSETEGPRMP AKVNDVFWER FLTGEAESGR QHADDKSEAT EAKEDIKIAI  420
NCSSLNHQNN VDQITEQMGH LDSAENGSDV TGDD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B6e-25811016129Heat shock factor protein 1
5d5v_B6e-25811016129Heat shock factor protein 1
5d5v_D6e-25811016129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00443DAPTransfer from AT4G18880Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:12032317}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810280.10.0heat stress transcription factor A-4d-like
RefseqXP_025810281.10.0heat stress transcription factor A-4d-like
SwissprotQ93VB50.0HFA4D_ORYSJ; Heat stress transcription factor A-4d
TrEMBLA0A2S3HA790.0A0A2S3HA79_9POAL; Uncharacterized protein
STRINGPavir.Ca01519.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32963778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.12e-74heat shock transcription factor A4A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  3. Kojo K, et al.
    Regulatory mechanisms of ROI generation are affected by rice spl mutations.
    Plant Cell Physiol., 2006. 47(8): p. 1035-44
    [PMID:16816407]