PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C01801.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 540aa    MW: 60099.4 Da    PI: 4.8031
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C01801.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM80.43.9e-25191632128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyat.gkrknratk....sgyWkatgkdk 90 
                     ppG++F Pt+ elv+ yL+ k++g++l+l ++++ev +++++P +L +++k+ +e++wyfF+ r+ ++++ ++++nr+++    +++Wkatg+  
  Pahal.C01801.1  19 PPGYHFVPTEAELVDVYLRGKIDGRELPL-DIVNEVAVLDWQPGSLVEAYKGyGENKWYFFTVREPSSSNkEEEPNRKVRvpgvKATWKATGSLV 112
                     9****************************.99**************8544443888*******999888636678887666667899******** PP

             NAM  91 evlsk..kgel...............vglkktLvfykgrapkgektdWvmheyrl 128
                     ++ ++  +                  vg+k++L++ + +a++    +W mhey l
  Pahal.C01801.1 113 PISVEggE--RqqeepgavrrkekvvVGTKRVLIYQSSDAEE--DGKWSMHEYIL 163
                     ***99651..3345667777777777*********9777766..89*******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-2611180IPR003441NAC domain
PROSITE profilePS5100529.28318180IPR003441NAC domain
PfamPF023655.0E-1619162IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MEVAVRPQPH ELVRQLQFPP GYHFVPTEAE LVDVYLRGKI DGRELPLDIV NEVAVLDWQP  60
GSLVEAYKGY GENKWYFFTV REPSSSNKEE EPNRKVRVPG VKATWKATGS LVPISVEGGE  120
RQQEEPGAVR RKEKVVVGTK RVLIYQSSDA EEDGKWSMHE YILKGHAKIG QYALCSIQRK  180
QHSETVDANA GEGCSSSSRK RTRARNVDPE KTKKKRTINK AASTKRIARR KNKISARAEE  240
EQQQEEVALV SSPVKPPFTP PQHQLQAPPQ ALQHEQKALA AYGAPVLTAL PLQGYPAPSD  300
GMLGDYAPMH EEDTRAGSFQ RDDDMSRCLE IQNLLRSCSR EEQLPCYTVN EVIADSHAQY  360
QLYQQQDDCE FFALEDQYAS QYLYQDSDLF PGDTTQNSSI WKHGQHQIYQ QEVGGAFGTP  420
DQQTNAQYYD QLPYELMCSG YLPAQAGGYC SSDQFIGSVQ GDTAASGSDG DMGLAADDEF  480
DGMSMLRDDD PEECVGAQDG SNPEALQSQD PRSWGQQQHT AHGHVCDGPP SRSISDFWA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-161318315171NAC domain-containing protein 19
3swm_B2e-161318315171NAC domain-containing protein 19
3swm_C2e-161318315171NAC domain-containing protein 19
3swm_D2e-161318315171NAC domain-containing protein 19
3swp_A2e-161318315171NAC domain-containing protein 19
3swp_B2e-161318315171NAC domain-containing protein 19
3swp_C2e-161318315171NAC domain-containing protein 19
3swp_D2e-161318315171NAC domain-containing protein 19
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1198215RKRTRARNVDPEKTKKKR
2199213KRTRARNVDPEKTKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021303969.13e-87uncharacterized protein LOC110430538
TrEMBLA0A2S3H9880.0A0A2S3H988_9POAL; Uncharacterized protein
STRINGPavir.J26931.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115562137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15500.12e-15NAC domain containing protein 3