PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pahal.C01483.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 248aa MW: 25676.1 Da PI: 9.2581 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 130 | 1.1e-40 | 60 | 159 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca++C+++pyf +p+kfa+vhk+FGasnv+k+l +++e++r da++slvyeA+ r+rdPvyG++g il+lqqq++ l+aela Pahal.C01483.1 60 PCAACKLLRRRCAQECPFSPYFSPLEPHKFAAVHKVFGASNVSKMLLEVHESQRADAANSLVYEANLRLRDPVYGCMGAILTLQQQVQALEAELA 154 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e Pahal.C01483.1 155 TVRAE 159 *9987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.397 | 59 | 160 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.3E-40 | 60 | 157 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0016020 | Cellular Component | membrane |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 248 aa Download sequence Send to blast |
MSTASEWPDH ELGKKIKRES AAAAADRMTA ARRSCSLPAG AGATAAAGAG PGSALNTITP 60 CAACKLLRRR CAQECPFSPY FSPLEPHKFA AVHKVFGASN VSKMLLEVHE SQRADAANSL 120 VYEANLRLRD PVYGCMGAIL TLQQQVQALE AELATVRAEI VRHRYRPAAA AASPVATVLP 180 SSHASQLLAA SAVSRGLHLH AGRPVGTRTA TLAAASSSSS SVVYAAAAAS SSTDYSSITN 240 ENVPYFG* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-39 | 60 | 163 | 11 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-39 | 60 | 163 | 11 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00283 | DAP | Transfer from AT2G30340 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | FP095831 | 1e-140 | FP095831.1 Phyllostachys edulis cDNA clone: bphyst036h20, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025808904.1 | 1e-178 | LOB domain-containing protein 15-like isoform X1 | ||||
Swissprot | Q9AT61 | 2e-70 | LBD13_ARATH; LOB domain-containing protein 13 | ||||
TrEMBL | A0A3L6SWK5 | 1e-119 | A0A3L6SWK5_PANMI; LOB domain-containing protein 15-like | ||||
STRING | Pavir.J00291.1.p | 1e-125 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2630 | 38 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G40470.1 | 6e-56 | LOB domain-containing protein 15 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pahal.C01483.1 |
Publications ? help Back to Top | |||
---|---|---|---|
|