PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C01412.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GATA
Protein Properties Length: 138aa    MW: 15011.2 Da    PI: 10.5421
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C01412.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.83.5e-192357135
            GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                    C+ C+tt Tp+WR gp g+++LCnaCG++yrkk++
  Pahal.C01412.1 23 CVECRTTATPMWRGGPTGPRSLCNACGIRYRKKRR 57
                    ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.2E-141774IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.23E-131958No hitNo description
Gene3DG3DSA:3.30.50.108.1E-152258IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.1762353IPR000679Zinc finger, GATA-type
CDDcd002024.58E-122358No hitNo description
PfamPF003204.8E-172357IPR000679Zinc finger, GATA-type
PROSITE patternPS0034402348IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MMDSAEHKVI GIAAAAEPGR PCCVECRTTA TPMWRGGPTG PRSLCNACGI RYRKKRRQEL  60
GLDNNKKPQQ NQQQPHPPQQ PQQPQHQDHS LAPSAVKDNK SSGLQVVKKR RVLMGVEEAA  120
ILLMALSSSS RSTLLHG*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807325.19e-98GATA transcription factor 23-like
TrEMBLA0A2S3H8802e-96A0A2S3H880_9POAL; Uncharacterized protein
STRINGSi011269m3e-59(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67212854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26930.19e-21GATA transcription factor 23