PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C01288.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 367aa    MW: 38350.2 Da    PI: 6.9982
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C01288.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.89.2e-14175220555
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     h ++Er+RR++iN+++ eL +++P +     kK++Ka+iL  A +Y+k+Lq
  Pahal.C01288.1 175 HIIAERKRREKINKRLIELSTVIPGL-----KKMDKATILSDAAKYVKELQ 220
                     889***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.364170219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-17175232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.77E-17175234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.41E-15175224No hitNo description
PfamPF000102.4E-11175220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-14176225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MEDSSMFMQW AMDTLLNEHP EPAIIGDGCG DGEATFPSLQ ALRNASHAVE MVRELMADEA  60
HDAANSWSSG DGDITDGSGT TVRAPAAARD DNHGSWPQSQ CSFRRAPPPS SNTNLPLVSW  120
NFVTGSAQPG SGGMVEEGAA PRSLPEPAHV SPPRTRRASL RSLGAASSAS YAPDHIIAER  180
KRREKINKRL IELSTVIPGL KKMDKATILS DAAKYVKELQ QRLKALEEEA AAAGSNARSN  240
ETVVRVKKPC NAAAAAADEN GSPSSMSASS GPPATGKPAL PEIQARFSEK SAMVRIHCGS  300
GKGVAVTVLA EVEDLGLSIV HANVMPFSAC TVIITITAKF VSGGGGLHRN SGGDRRPAQL  360
CIITPA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1178183ERKRRE
2179184RKRREK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806554.10.0transcription factor bHLH18-like
TrEMBLA0A2S3H7Y60.0A0A2S3H7Y6_9POAL; Uncharacterized protein
STRINGPavir.J26871.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92731143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22750.15e-26bHLH family protein