PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C01195.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C3H
Protein Properties Length: 594aa    MW: 62798.2 Da    PI: 8.2917
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C01195.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.74.8e-09260281526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C+ f+++G C+ Gd+C +aHg
  Pahal.C01195.1 260 PCPEFRKGGACRKGDNCEYAHG 281
                     8********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484036.75E-712151IPR020683Ankyrin repeat-containing domain
SMARTSM0024855074104IPR002110Ankyrin repeat
Gene3DG3DSA:1.25.40.203.5E-774157IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029712.43474144IPR020683Ankyrin repeat-containing domain
SMARTSM002480.12109141IPR002110Ankyrin repeat
PROSITE profilePS5008810.579109144IPR002110Ankyrin repeat
SuperFamilySSF902294.58E-5255285IPR000571Zinc finger, CCCH-type
SMARTSM003564.2E-6255282IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.441255283IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-6260281IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.6E-5260283IPR000571Zinc finger, CCCH-type
SMARTSM0035689291314IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.643291315IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 594 aa     Download sequence    Send to blast
MCSGPRKPST PPLPAATSKD SAVMAALLLE LAAADDVVAF RRAVEDDKVS ALDAACQWYG  60
PSAAAAAGPR LRLELRTPAM VAALYGSTAV LAYVLSAAPA EAARASPTDG ATPLHLAAAG  120
GAAGAVAAAH LLLAAGASAD ALAFSGLRAG DLLPRANAAA ERDRALRVLL KSPAVSPSSS  180
PKKSASPPPA PEPRKEYPPD LTLPDLKSGL FSTDEFRMYS FKVKPCSRAY SHDWTECPFV  240
HPGENARRRD PRRYSYSCVP CPEFRKGGAC RKGDNCEYAH GVFECWLHPA QYRTRLCKDE  300
VGCARRICFF AHKPEELRAV NPSAVSVGMQ PAVSSPRSSP PNGLDMGMLN PAWPSSPASR  360
LKTALAGREL DFDLELLALD QYQQKLFDKV SSPRASWGSA GGIGSQLPAA APSRTVPDYT  420
DLLGSVDPAM LSQLHALSLK QAGDMPAYNS MADTQLHMPT SPMVSANTAF GLDHSMAKAI  480
MSSRASAFAK RSQSFIDRGG RAPATRSLMS QATTGAPSML SDWGSPDGKL DWGVQGDELH  540
KFRKSASFAF RGQSPAPVAA PTEPDVSWVN SLVKDGHAGD IFAQWPEQEQ MVA*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0969790.0FP096979.1 Phyllostachys edulis cDNA clone: bphyem206f17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807185.10.0zinc finger CCCH domain-containing protein 33-like
SwissprotQ688R30.0C3H33_ORYSJ; Zinc finger CCCH domain-containing protein 33
TrEMBLA0A2S3H7M70.0A0A2S3H7M7_9POAL; Uncharacterized protein
STRINGSi021557m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60132133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.11e-110C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]