PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C01150.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family AP2
Protein Properties Length: 486aa    MW: 52544.3 Da    PI: 7.3456
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C01150.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.56.1e-17162211155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Pahal.C01150.1 162 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 211
                     78*******************......55************************997 PP
2AP241.24.2e-13254304155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k +g
  Pahal.C01150.1 254 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIKCNG 304
                     89********.7******5553..2.26**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.6E-9162211IPR001471AP2/ERF domain
SuperFamilySSF541715.95E-16162220IPR016177DNA-binding domain
CDDcd000181.19E-10163221No hitNo description
Gene3DG3DSA:3.30.730.103.5E-17163220IPR001471AP2/ERF domain
PROSITE profilePS5103217.794163219IPR001471AP2/ERF domain
SMARTSM003803.3E-32163225IPR001471AP2/ERF domain
PfamPF008471.3E-8254304IPR001471AP2/ERF domain
CDDcd000182.33E-24254314No hitNo description
SuperFamilySSF541717.85E-17254313IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-15255312IPR001471AP2/ERF domain
SMARTSM003801.8E-32255318IPR001471AP2/ERF domain
PROSITE profilePS5103215.527255312IPR001471AP2/ERF domain
PRINTSPR003675.2E-6256267IPR001471AP2/ERF domain
PRINTSPR003675.2E-6294314IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MELDLNVAEV APEKTAAMAA SDSGSSESSV LNAEASGGGA APAEEGSSST PPPPAVLEFS  60
ILRSESDAAG ADDDDDATPS PPHHHQQQQP QLITRELFPP AAGPPRPQPQ HWADLGFFRA  120
EPPRPQPDIR ILPHPHATPP APPPVQPQAA KKSRRGPRSR SSQYRGVTFY RRTGRWESHI  180
WDCGKQVYLG GFDTAHAAAR AYDRAAIKFR GVDADINFNL SDYEDDMKQM KSLSKEEFVH  240
VLRRQSTGFS RGSSKYRGVT LHKCGRWEAR MGQFLGKKYI YLGLFDSEVE AARAYDKAAI  300
KCNGREAVTN FEPSTYDGEL LSEVGTEAGA DVDLNLSISQ PASQSPKRDK NSLGLQIHHG  360
SFEGAELKRT KVDTPPELAG RPHRFPVMTE HPPIWPAQSH PFFTNHESAS RHLNRRPAEG  420
GTGGVPSWAW KVTAPPPTLP LPLFSSSSSS AAASSGFSNT ATTAALATPS ASLRFDPPSS  480
SSHQR*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX4020840.0JX402084.1 Phyllostachys edulis transcription factor AP2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806428.10.0floral homeotic protein APETALA 2-like isoform X1
SwissprotB8AXC30.0AP21_ORYSI; APETALA2-like protein 1
TrEMBLA0A2S3H7V70.0A0A2S3H7V7_9POAL; Uncharacterized protein
STRINGPavir.J23348.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100832935
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-98related to AP2.7